View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20299_low_1 (Length: 514)
Name: NF20299_low_1
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 48685651 - 48685419
Alignment:
| Q |
23 |
acggtcaactttagagctttcttgaggagttttattcaacaacatgttaaggatgcaacaagaacgacacggttgtgaggtttaggagggcggcgttggt |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
48685651 |
acggtcaactttagagctctcttgaggagttttattcaacaaaatgttaaggatgcaacaagaacgacacggttgtgagatttaggagggcggcattggt |
48685552 |
T |
|
| Q |
123 |
ggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaaataatatag----tgtggagagaatatga |
218 |
Q |
| |
|
|||||||||||| ||| || |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
48685551 |
ggtgaagttgatgttgttgtagggtgagtgggaacatggaggagagacaagggtggtgtaatattgtaaaaataatatagtatatatgtagagaatatga |
48685452 |
T |
|
| Q |
219 |
taagaatatagttttcaattgatataatggttc |
251 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |
|
|
| T |
48685451 |
taagaatatagtcttcatttgatataatggttc |
48685419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 50267845 - 50267617
Alignment:
| Q |
23 |
acggtcaactttagagctttcttgaggagttttattcaacaacatgttaaggatgcaacaagaacgacacggttgtgaggtttaggagggcggcgttggt |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||| ||||| | |||||||| ||||||||||||| || |
|
|
| T |
50267845 |
acggtcaactttagagctcccttgaggagttttattcaacaaaattttaaggattcaacaagaaggacacatatttgaggtttgggagggcggcgttagt |
50267746 |
T |
|
| Q |
123 |
ggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaaataatatagtgtggagagaatatgataag |
222 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50267745 |
ggtgaagttgatgttgctggtgggtgagtggggacatggaggagagacaagggtggtgtaataatgtaaaaataatatagtgtggagagaatatgataag |
50267646 |
T |
|
| Q |
223 |
aatatagttttcaattgatataatggttc |
251 |
Q |
| |
|
|||||||| |||| ||||| ||||||||| |
|
|
| T |
50267645 |
aatatagtcttcatttgatctaatggttc |
50267617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 37688650 - 37688604
Alignment:
| Q |
25 |
ggtcaactttagagctttcttgaggagttttattcaacaacatgtta |
71 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
37688650 |
ggtcaactttagagctctcttgaggagttttattcaacaaaatgtta |
37688604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 193966 - 193929
Alignment:
| Q |
190 |
aaaaataatatagtgtggagagaatatgataagaatat |
227 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
193966 |
aaaaataatctagtgtggagagagtatgataagaatat |
193929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 32870977 - 32871103
Alignment:
| Q |
94 |
gttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaa |
193 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||| || ||||||| |||||| || | ||||||| ||||||||||||||||| |||| ||| ||| |
|
|
| T |
32870977 |
gttgtgaggtttgggagggcggtgctggtggtgaagttcatgttgctggcgggtgagtgaggacatggaagagagacaagggtgatggaatagtgt-aaa |
32871075 |
T |
|
| Q |
194 |
ataatatagtgtggagagaatatgataa |
221 |
Q |
| |
|
|||||||||| | |||||| |||||||| |
|
|
| T |
32871076 |
ataatatagtattgagagactatgataa |
32871103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 7987619 - 7987493
Alignment:
| Q |
94 |
gttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgatgcaatattgtaaaa |
193 |
Q |
| |
|
|||||||||||| ||||||||| | || |||||||||| || ||||||| |||||| || | ||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
7987619 |
gttgtgaggtttgggagggcggtgctgatggtgaagttcatgttgctggcgggtgagtgaggacatggaagagagacaagggtgatggaatagtgtaaaa |
7987520 |
T |
|
| Q |
194 |
ataatatagtgtggagagaatatgataa |
221 |
Q |
| |
|
|||||||||| | |||||| |||||||| |
|
|
| T |
7987519 |
ataatatagtat-gagagactatgataa |
7987493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 28886891 - 28886976
Alignment:
| Q |
94 |
gttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtgggtgaatgggaacatggaggagagacaagggtgat |
179 |
Q |
| |
|
|||||||||||| |||||| | | |||||||||| ||||| ||||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
28886891 |
gttgtgaggttttggagggtgatgctggtggtgaaattgatgttgctggcgggtgagtggggacatggaggagagacaagggtgat |
28886976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 40050261 - 40050396
Alignment:
| Q |
93 |
ggttgtgaggtttaggagggcggcgttggtggtgaagttgatattgctggtg------ggtgaatgggaacatggaggagagac-aagggtgatgcaata |
185 |
Q |
| |
|
|||| |||||| ||||||||||| | || ||||||||||||| |||| |||| ||||||| || ||||||||||||||| || |||| || |||| |
|
|
| T |
40050261 |
ggttctgaggtataggagggcggtgctg-tggtgaagttgatgttgcaggtgatggttggtgaatagggacatggaggagagacaaatggtggtggaata |
40050359 |
T |
|
| Q |
186 |
ttgtaaaa-ataatatagtgtggagagaatatgataa |
221 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
40050360 |
atgtaaaatataatacagtgtggagagaatataataa |
40050396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 4479634 - 4479671
Alignment:
| Q |
190 |
aaaaataatatagtgtggagagaatatgataagaatat |
227 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
4479634 |
aaaaataatttagtgtggagagagtatgataagaatat |
4479671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University