View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_low_14 (Length: 238)
Name: NF20299_low_14
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 55479644 - 55479420
Alignment:
| Q |
1 |
ctaccatttctttccactcaacaatcgtccttgccgtctcaaatacaaatttgttgatgtatatttgggagaagtgctagaaaacgtgtatcaatttttc |
100 |
Q |
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| T |
55479644 |
ctaccatttctttccactcaacaatcgtccttgccgtctcaaatacaaatttgttgatgtatatttgggagaagtgctagaaaacgtgtatcaatttttc |
55479545 |
T |
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| Q |
101 |
ctaaattcattttaatagacgttcatagatcaagaattttgtgtgcgcacctaaataagttgaatttgtatgt----atgaccatataaaaatacaagtt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55479544 |
ctaaattcattttaatagacgttcatagatcaagaattttgtgtgcgcacctaaataagttgaatttgtatgtatgcatgaccatataaaaatacaagtt |
55479445 |
T |
|
| Q |
197 |
atcttacaaatttcattgctattaa |
221 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
55479444 |
atcttccaaatttcattgctattaa |
55479420 |
T |
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