View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20299_low_20 (Length: 212)

Name: NF20299_low_20
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20299_low_20
NF20299_low_20
[»] chr4 (20 HSPs)
chr4 (20-194)||(48155770-48155944)
chr4 (30-143)||(48871151-48871264)
chr4 (30-143)||(48876455-48876568)
chr4 (30-143)||(48886837-48886950)
chr4 (42-188)||(48147085-48147228)
chr4 (73-168)||(45384290-45384385)
chr4 (73-155)||(45365620-45365702)
chr4 (31-158)||(37826351-37826478)
chr4 (30-145)||(45371428-45371543)
chr4 (34-145)||(7801226-7801336)
chr4 (30-85)||(50673459-50673514)
chr4 (101-145)||(7908885-7908929)
chr4 (70-145)||(7237147-7237221)
chr4 (34-145)||(7823558-7823668)
chr4 (91-146)||(48734838-48734893)
chr4 (91-145)||(48863848-48863902)
chr4 (66-143)||(49040551-49040628)
chr4 (69-145)||(7790663-7790739)
chr4 (118-154)||(48864615-48864651)
chr4 (66-162)||(48903524-48903620)
[»] chr8 (6 HSPs)
chr8 (20-165)||(4030135-4030280)
chr8 (76-160)||(15349463-15349547)
chr8 (113-154)||(12195898-12195939)
chr8 (112-145)||(12200922-12200955)
chr8 (113-154)||(12440326-12440367)
chr8 (112-145)||(12445350-12445383)
[»] chr2 (1 HSPs)
chr2 (20-138)||(29351018-29351136)
[»] chr5 (1 HSPs)
chr5 (30-143)||(9120354-9120470)
[»] chr1 (2 HSPs)
chr1 (69-145)||(24341000-24341076)
chr1 (69-145)||(24353365-24353441)
[»] chr6 (1 HSPs)
chr6 (109-146)||(21016409-21016446)
[»] chr7 (1 HSPs)
chr7 (113-144)||(30124742-30124773)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 48155770 - 48155944
Alignment:
Q  20 taatacaaggtaaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48155770 taatacaaggtaaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagg 48155869  T
Q  120 gagtgaaagcaaagactctgtatacacggtcacttgggatccaaatggaagtggaccgtcccagaatgatccatg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48155870 gagtgaaagcaaagactctgtatacacggtcacttgggatccaaatggaagtggaccgtcccagaatgatccatg 48155944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 48871264 - 48871151
Alignment:
Q  30 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagc 129  Q
    |||||||||||||||| |||||||| | || || || |||||||||||||||||||||    |||||||  | ||| |||||||||||||||||||||||    
T  48871264 taaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagc 48871165  T
Q  130 aaagactctgtata 143  Q
    ||||||||||||||    
T  48871164 aaagactctgtata 48871151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 48876568 - 48876455
Alignment:
Q  30 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagc 129  Q
    |||||||||||||||| |||||||| | || || || |||||||||||||||||||||    |||||||  | ||| |||||||||||||||||||||||    
T  48876568 taaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagc 48876469  T
Q  130 aaagactctgtata 143  Q
    ||||||||||||||    
T  48876468 aaagactctgtata 48876455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 48886950 - 48886837
Alignment:
Q  30 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagc 129  Q
    |||||||||||||||| |||||||| | || || || |||||||||||||||||||||    |||||||  | ||| |||||||||||||||||||||||    
T  48886950 taaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagc 48886851  T
Q  130 aaagactctgtata 143  Q
    ||||||||||||||    
T  48886850 aaagactctgtata 48886837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 48147085 - 48147228
Alignment:
Q  42 aaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgta 141  Q
    |||| |||||||||| | ||| |||||||||||||   ||||||||   |||||||||| | |||||||||||| |||||||||||||| |||||| |||    
T  48147085 aaatagtgaaggataatctttaaatacctcattct---tgtttgtgtcatcttcttagggtagcacattgtcactagggagtgaaagcagagactcagta 48147181  T
Q  142 tacacggtcacttgggatccaaatggaagtggaccgtcccagaatga 188  Q
    |||| ||||||  ||||||||| ||||   |||||||||||||||||    
T  48147182 tacatggtcaccagggatccaattggacacggaccgtcccagaatga 48147228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 45384290 - 45384385
Alignment:
Q  73 ttcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtatacacggtcacttgggatccaaatgga 168  Q
    |||||||||||||||   |||||||| |||||| ||||||||||||  |||||||| | ||||||||||||||||| |||||| ||||||| ||||    
T  45384290 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccagaaagtgaaaggagagactctgtatacacggccacttgagatccaagtgga 45384385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 45365620 - 45365702
Alignment:
Q  73 ttcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtatacacggtcacttg 155  Q
    |||||||||||||||   |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||| || ||||||    
T  45365620 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtatacatggccacttg 45365702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 37826351 - 37826478
Alignment:
Q  31 aaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagca 130  Q
    ||||||||||||||| |||||||| | |||||| | ||||||||||||||||||||    ||||||||  ||||| |   |||| |||||| ||||||||    
T  37826351 aaatatcaagaaaatggtgaaggagaatattttgaaacctcattcttcttgtttgtatcatcttcttaaacttgctctccgtcaacagggaatgaaagca 37826450  T
Q  131 aagactctgtatacacggtcacttggga 158  Q
     |||||| ||||||| | || |||||||    
T  37826451 gagactccgtatacatgatcgcttggga 37826478  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 45371428 - 45371543
Alignment:
Q  30 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagc 129  Q
    ||||| |||||||||| | ||||| || |||||||  ||||||||| |||||| ||||   |||||||| |||||  ||||||| | || ||||||||||    
T  45371428 taaatttcaagaaaatagggaagggtaatattttacaacctcattcatcttgtctgtgccatcttcttaagcttgatcattgtcgctagagagtgaaagc 45371527  T
Q  130 aaagactctgtataca 145  Q
    | ||||||||||||||    
T  45371528 agagactctgtataca 45371543  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 7801336 - 7801226
Alignment:
Q  34 tatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaag 133  Q
    |||||||||||| ||||| |||  ||||| | ||||||||| ||||||||| ||   ||||||||  ||| | ||||||| |||||||||||||||| ||    
T  7801336 tatcaagaaaatggtgaatgatgatatttcagtacctcatt-ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7801238  T
Q  134 actctgtataca 145  Q
    |||| |||||||    
T  7801237 actcggtataca 7801226  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 50673514 - 50673459
Alignment:
Q  30 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttg 85  Q
    |||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
T  50673514 taaatatcaagaaaatggtgaaggaaaatattttaaaacctcattcttcatgtttg 50673459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7908929 - 7908885
Alignment:
Q  101 cttgcacattgtcaccagggagtgaaagcaaagactctgtataca 145  Q
    ||||| |||||||||||||||||||||||| |||||| |||||||    
T  7908929 cttgctcattgtcaccagggagtgaaagcagagactcggtataca 7908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 7237147 - 7237221
Alignment:
Q  70 tcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtataca 145  Q
    ||||| ||||||||||||   |||| ||| || ||| ||||||||||| |||||||||||| ||||||||||||||    
T  7237147 tcattgttcttgtttgtgtcatctt-ttaagcatgctcattgtcaccaaggagtgaaagcagagactctgtataca 7237221  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 7823668 - 7823558
Alignment:
Q  34 tatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaag 133  Q
    |||||| ||||| ||||| |||  ||||| | ||||||||| ||||||||| ||   ||||||||  ||| | ||||||| |||||||||||||||| ||    
T  7823668 tatcaataaaatggtgaatgatgatatttcagtacctcatt-ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7823570  T
Q  134 actctgtataca 145  Q
    |||| |||||||    
T  7823569 actcggtataca 7823558  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 48734838 - 48734893
Alignment:
Q  91 tcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtatacac 146  Q
    ||||||||||||||  || | ||||| ||||||||||||| |||||||||||||||    
T  48734838 tcttcttaggcttgttcactttcaccggggagtgaaagcagagactctgtatacac 48734893  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 48863902 - 48863848
Alignment:
Q  91 tcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtataca 145  Q
    |||||||| |||||| || |||||  |||||||||||||| ||||||||||||||    
T  48863902 tcttcttaagcttgctcactgtcattagggagtgaaagcagagactctgtataca 48863848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 49040551 - 49040628
Alignment:
Q  66 tacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtata 143  Q
    ||||||||||||||||||||||   |||||||| ||||||  | |||||   ||||||||||||| |||||| |||||    
T  49040551 tacctcattcttcttgtttgtgccatcttcttaagcttgctaactgtcattggggagtgaaagcagagactccgtata 49040628  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 7790739 - 7790663
Alignment:
Q  69 ctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtataca 145  Q
    |||||| || ||||||||||  ||||||||  | ||| ||||||||||| | |||||||||| ||| ||||||||||    
T  7790739 ctcattgtttttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtataca 7790663  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 48864651 - 48864615
Alignment:
Q  118 gggagtgaaagcaaagactctgtatacacggtcactt 154  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  48864651 gggagtgaaagcaaagactctgtatgcacagtcactt 48864615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 48903620 - 48903524
Alignment:
Q  66 tacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtatacacggtcacttgggatcca 162  Q
    ||||||||||||||| ||| ||   ||||||||  |||||  | ||||||||||||||||||  | |||||||  ||||| || |||||||||||||    
T  48903620 tacctcattcttcttatttatgccatcttcttaaacttgcttaatgtcaccagggagtgaaaatagagactctacatacaaggccacttgggatcca 48903524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 4030135 - 4030280
Alignment:
Q  20 taatacaaggtaaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagg 119  Q
    ||||||||  ||| |||||||||||| ||||| |||| || || || | ||||||||||||||||| |   |||||||| |||||| |||||| ||||||    
T  4030135 taatacaatataattatcaagaaaatagtgaaagataatacttcaaaaactcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagg 4030234  T
Q  120 gagtgaaagcaaagactctgtatacacggtcacttgggatccaaat 165  Q
    ||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  4030235 gagtgaaagcagagactctgtgtacatggtcacttgagatccaaat 4030280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 15349547 - 15349463
Alignment:
Q  76 ttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtatacacggtcacttgggatc 160  Q
    |||||||||| |  ||| ||||| || ||| |||| ||||||||||||||||||| ||||||||||||||  | |||||||||||    
T  15349547 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagccacttgggatc 15349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 12195939 - 12195898
Alignment:
Q  113 caccagggagtgaaagcaaagactctgtatacacggtcactt 154  Q
    |||||||||||||||||| |||||||||||||| || |||||    
T  12195939 caccagggagtgaaagcagagactctgtatacatggccactt 12195898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 12200955 - 12200922
Alignment:
Q  112 tcaccagggagtgaaagcaaagactctgtataca 145  Q
    ||||||||||||||||||| ||||||||||||||    
T  12200955 tcaccagggagtgaaagcagagactctgtataca 12200922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 12440367 - 12440326
Alignment:
Q  113 caccagggagtgaaagcaaagactctgtatacacggtcactt 154  Q
    |||||||||||||||||| |||||||||||||| || |||||    
T  12440367 caccagggagtgaaagcagagactctgtatacatggccactt 12440326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 12445383 - 12445350
Alignment:
Q  112 tcaccagggagtgaaagcaaagactctgtataca 145  Q
    ||||||||||||||||||| ||||||||||||||    
T  12445383 tcaccagggagtgaaagcagagactctgtataca 12445350  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 29351136 - 29351018
Alignment:
Q  20 taatacaaggtaaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagg 119  Q
    ||||||||  ||| |||||||||||| ||||| |||| ||||| |  ||||||||||||||||||| |   |||||||| |||||| |||||||||| ||    
T  29351136 taatacaatataattatcaagaaaatagtgaaagataatatttcacaacctcattcttcttgtttgagtcatcttcttaagcttgctcattgtcaccggg 29351037  T
Q  120 gagtgaaagcaaagactct 138  Q
    ||||||||||| |||||||    
T  29351036 gagtgaaagcatagactct 29351018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 9120470 - 9120354
Alignment:
Q  30 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttctt---gtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaa 126  Q
    |||| ||||||||||| |||||||| | ||||| || ||||||||||||||   |||||||   ||| |||| |||||  ||||||||||||||||||||    
T  9120470 taaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtgaa 9120371  T
Q  127 agcaaagactctgtata 143  Q
    |||| ||||||||||||    
T  9120370 agcagagactctgtata 9120354  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 24341076 - 24341000
Alignment:
Q  69 ctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtataca 145  Q
    |||||||||||||||||||   |||||||| |||| | ||||||||| ||||||||||||||||||||| |||||||    
T  24341076 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtataca 24341000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 24353441 - 24353365
Alignment:
Q  69 ctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtataca 145  Q
    |||||||||||||||||||   |||||||| |||| | ||||||||| ||||||||||||||||||||| |||||||    
T  24353441 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtataca 24353365  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 21016446 - 21016409
Alignment:
Q  109 ttgtcaccagggagtgaaagcaaagactctgtatacac 146  Q
    |||||| |||||||||||||||||||||||||||||||    
T  21016446 ttgtcatcagggagtgaaagcaaagactctgtatacac 21016409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 144
Target Start/End: Original strand, 30124742 - 30124773
Alignment:
Q  113 caccagggagtgaaagcaaagactctgtatac 144  Q
    ||||||||||||||||||||||||||||||||    
T  30124742 caccagggagtgaaagcaaagactctgtatac 30124773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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