View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_low_3 (Length: 465)
Name: NF20299_low_3
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 104 - 368
Target Start/End: Complemental strand, 48880182 - 48879918
Alignment:
| Q |
104 |
taccttaagaatgtattggtttagctaactatgtgatttctggtgttttagaaaaatgctcgggtagtctctattgatggatatgaagatgttcctcaga |
203 |
Q |
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| T |
48880182 |
taccttaagaatgtattggtttagctaactatgtgatttctggtgttttagaaaaatgctcgggtagtctctattgatggatatgaagatgttcctcaga |
48880083 |
T |
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| Q |
204 |
atgatgagaaatctttgaagaaggcggttgcacatcaacctgttagcgttgccattgaagctggtggcagggcatttcaactttaccaatcggtattata |
303 |
Q |
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| T |
48880082 |
atgatgagaaatctttgaagaaggcggttgcacatcaacctgttagcgttgccattgaagctggtggcagggcatttcaactttaccaatcggtattata |
48879983 |
T |
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| Q |
304 |
tctatctctttcttaattacttttttatgatgacaattgtgtaacattaagtgattaattgttca |
368 |
Q |
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| T |
48879982 |
tttatctctttcttaattacttttttatgatgacaattgtgtaacattaagtgattaattgttca |
48879918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 48880301 - 48880252
Alignment:
| Q |
17 |
cattcagggtatataaaataattttacacttgcttgttccattttctata |
66 |
Q |
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| T |
48880301 |
cattcagggtatataaaataattttacacttgcttgttccattttctata |
48880252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 48879932 - 48879884
Alignment:
| Q |
383 |
gtgattaattgttcaaatgtgttgatggtgtcgacttacttaaatgaat |
431 |
Q |
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| T |
48879932 |
gtgattaattgttcaaatgtgttgatggtgtcgacttacttaaatgaat |
48879884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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