View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_low_4 (Length: 462)
Name: NF20299_low_4
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 34 - 453
Target Start/End: Original strand, 37119718 - 37120140
Alignment:
| Q |
34 |
tcatagagaatatataatactacaagcatttgtctgtcttacaaggatcctaaccataaattattgcttttctacatcgacttcaatggcacgtcatttt |
133 |
Q |
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| T |
37119718 |
tcatagagaatatataatactacaagcatttgtctgtcttacaaggatcctaaccataaattattgcttttctacatcgacttcaatggcacgtcatttt |
37119817 |
T |
|
| Q |
134 |
atacaa---tggttcattgaattttactttttacctattgaacagaatcctagaaagtaacatttaaacaaggattgctacaggtaaatatgcatacaat |
230 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119818 |
atacaacaatggttcattgaattttactttttacctattgaacagaatcctagaaagtaacatttaaacaaggattgctacaggtaaatatgcatacaat |
37119917 |
T |
|
| Q |
231 |
agcatatatgcaattcaagtattaaatatacttctctatgtaacctacaggaaaaatctatgctgtaccttagatctgcacttattcattatatcaataa |
330 |
Q |
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| T |
37119918 |
agcatatatgcaattcaagtattaaatatacttctctatgtaacctacaggaaaaatctatgctgtaccttagatctgcacttattcattatatcaataa |
37120017 |
T |
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| Q |
331 |
actcatttctcccaattccagtaagccttaaagcgtctgcagcactaaaatttgggatgctgtcataaggttgctctgcaaataatcaaacaaacattta |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37120018 |
actcatttctcccaattccagtaagccttaaagcgtctgcagcactaaaatttgggatgctgtcataaggttgctctgcaaataatcaaacaaacattta |
37120117 |
T |
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| Q |
431 |
ctattcaacatacggagtattat |
453 |
Q |
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| T |
37120118 |
ctattcaacatacggagtattat |
37120140 |
T |
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Back To:
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Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 295 - 413
Target Start/End: Complemental strand, 36244469 - 36244351
Alignment:
| Q |
295 |
gtaccttagatctgcacttattcattatatcaataaactcatttctcccaattccagtaagccttaaagcgtctgcagcactaaaatttgggatgctgtc |
394 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
36244469 |
gtaccttagatctgcacttgttcattatatcaataaattcatttctcccgattcctgtaagtcttaaagcatctgctgcactaaaatttgggatgctgtc |
36244370 |
T |
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| Q |
395 |
ataaggttgctctgcaaat |
413 |
Q |
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| T |
36244369 |
ataaggttgctctgcaaat |
36244351 |
T |
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