View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_low_5 (Length: 393)
Name: NF20299_low_5
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 46277085 - 46276947
Alignment:
| Q |
108 |
caaattcaatgttgaatctatggtgtacaaataaaatagtattgcactatgtataatttatttttcccctcattattcaatcaataaatctcattgtatt |
207 |
Q |
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| T |
46277085 |
caaattcaatgttgaatctatggtgtacaaataaaatagtattgcactatgtataatttttttttcccctcattattcaatcaataaatctcattgtatt |
46276986 |
T |
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| Q |
208 |
tcagttgatttattggtaggacttattgatctaagtgtg |
246 |
Q |
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| T |
46276985 |
tcagttgatttattggtaggacttattgatctaagtgtg |
46276947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 243 - 375
Target Start/End: Complemental strand, 46276909 - 46276781
Alignment:
| Q |
243 |
tgtgcatcatataaaaccatagcctaaattcaacaggagatgcaattataataactttatcattcatacaacaaatgtnnnnnnnnnnnnnnnntgccct |
342 |
Q |
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| T |
46276909 |
tgtgcatcatataaaaccatagcctaaattcaacaagagatgcaattataataacttta----tcatacaacaaatgtaaaaacaaaacaaaaatgccct |
46276814 |
T |
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| Q |
343 |
taattctttatgcagggttgtatacgtggttgg |
375 |
Q |
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| T |
46276813 |
taattctttatgcagggttgtatacgtggttgg |
46276781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 46277177 - 46277149
Alignment:
| Q |
16 |
atactttatcaaaaatgtgtcctccctag |
44 |
Q |
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| T |
46277177 |
atactttatcaaaaatgtgtcctccctag |
46277149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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