View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20299_low_9 (Length: 302)
Name: NF20299_low_9
Description: NF20299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20299_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 37625187 - 37625460
Alignment:
| Q |
18 |
taatatacattgcatcttgcttctttctggtatttctctcattggcaagttctccaacagcgacaatataattaattgtcctcatgcaatgagagaggct |
117 |
Q |
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| T |
37625187 |
taatatacattgcatcttgcttctttctggtatttctctcattggcaagttctccaacagcgacaatataattaattgtcctcatgcaatgagagaggct |
37625286 |
T |
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| Q |
118 |
tcaccaccaaaaatatttataatttctatatttggtttagtcaaaaaatataataatttctatttggtaaaaaatatacttataataacaatgactcttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37625287 |
tcaccaccaaaaatatttataatttctatatttggtttagtcaaaaaatataataatttctatttggtaaaaaatatacttataataacaatgactcttc |
37625386 |
T |
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| Q |
218 |
tttcnnnnnnnnta-aaataactatgactctgaccttagagtgtgtgtttcgttcaaagttatccacgaatatt |
290 |
Q |
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|||| | ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37625387 |
tttcaaaaaataaataaataacaatgactctaaccttagagtgtgtgtttggttcaaagttatccacgaatatt |
37625460 |
T |
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