View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2029_low_1 (Length: 563)

Name: NF2029_low_1
Description: NF2029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2029_low_1
NF2029_low_1
[»] scaffold0257 (1 HSPs)
scaffold0257 (11-549)||(18327-18865)
[»] chr3 (48 HSPs)
chr3 (100-412)||(28148993-28149307)
chr3 (11-277)||(28509767-28510036)
chr3 (11-280)||(28184771-28185043)
chr3 (11-277)||(28480584-28480853)
chr3 (14-280)||(28082712-28082981)
chr3 (11-213)||(28160219-28160424)
chr3 (130-246)||(28134729-28134845)
chr3 (316-420)||(28083057-28083161)
chr3 (310-420)||(28135423-28135533)
chr3 (302-415)||(28161391-28161504)
chr3 (302-415)||(28185233-28185346)
chr3 (210-420)||(28506906-28507104)
chr3 (18-280)||(28054393-28054652)
chr3 (18-280)||(28064818-28065077)
chr3 (143-280)||(27979596-27979733)
chr3 (419-490)||(28149344-28149415)
chr3 (310-420)||(8539640-8539750)
chr3 (143-228)||(11420153-11420238)
chr3 (278-419)||(27379345-27379485)
chr3 (143-280)||(28151056-28151193)
chr3 (310-406)||(18077088-18077184)
chr3 (343-418)||(18079162-18079237)
chr3 (277-384)||(27390666-27390772)
chr3 (189-280)||(27919514-27919605)
chr3 (157-280)||(28003328-28003451)
chr3 (310-420)||(17745002-17745112)
chr3 (310-420)||(19046322-19046432)
chr3 (276-417)||(27979884-27980027)
chr3 (276-420)||(27919756-27919900)
chr3 (280-376)||(28054936-28055031)
chr3 (280-376)||(28065361-28065456)
chr3 (216-280)||(28161137-28161201)
chr3 (314-420)||(28036886-28036992)
chr3 (276-419)||(26630752-26630895)
chr3 (276-366)||(27350005-27350094)
chr3 (447-488)||(28185372-28185413)
chr3 (197-249)||(17745345-17745397)
chr3 (197-249)||(19046665-19046717)
chr3 (186-274)||(26114053-26114141)
chr3 (343-419)||(28005314-28005390)
chr3 (192-280)||(28036606-28036694)
chr3 (372-416)||(28055908-28055952)
chr3 (372-416)||(28066333-28066377)
chr3 (435-490)||(27919936-27919991)
chr3 (381-420)||(28151336-28151375)
chr3 (432-490)||(27390569-27390627)
chr3 (187-249)||(27459748-27459810)
chr3 (431-483)||(27249896-27249948)
[»] chr7 (2 HSPs)
chr7 (130-280)||(8692902-8693052)
chr7 (302-404)||(8692622-8692724)
[»] scaffold0043 (1 HSPs)
scaffold0043 (278-419)||(51943-52083)
[»] chr2 (1 HSPs)
chr2 (276-419)||(22394321-22394463)
[»] scaffold1142 (1 HSPs)
scaffold1142 (282-419)||(1476-1612)
[»] chr4 (4 HSPs)
chr4 (364-420)||(9328781-9328837)
chr4 (364-420)||(9382558-9382614)
chr4 (455-490)||(9328716-9328751)
chr4 (455-490)||(9382493-9382528)
[»] scaffold1163 (1 HSPs)
scaffold1163 (351-419)||(5-73)


Alignment Details
Target: scaffold0257 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 549
Target Start/End: Original strand, 18327 - 18865
Alignment:
Q  11 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18327 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 18426  T
Q  111 atggatgtaattaatatttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18427 atggatgtaattaatatttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg 18526  T
Q  211 atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaacaaaaggcatttccctcatttttgctagca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18527 atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaacaaaaggcatttccctcatttttgctagca 18626  T
Q  311 ttctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaagga 410  Q
    ||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18627 ttctttttgacactttgtcaatgcaggaattgaattatactacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaagga 18726  T
Q  411 actacatcaggtccattatgtacttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaaatgctaaaagaaccaaagat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18727 actacatcaggtccattatgtacttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaaaagctaaaagaaccaaagat 18826  T
Q  511 taaggaaatataaacgggaatattgtcttgaaaattatg 549  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18827 taaggaaatataaacgggaatattgtcttgaaaattatg 18865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 100 - 412
Target Start/End: Original strand, 28148993 - 28149307
Alignment:
Q  100 ttagatatttaatggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtcc 196  Q
    ||||||||||||| |||| ||||||||  |   |||||||||||| |||||||||||||||||||||||||||||||  ||| ||| | ||||||||| |    
T  28148993 ttagatatttaattgatgcaattaatagctgaagatcattaatgcctatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttc 28149092  T
Q  197 acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaacaaaaggcatttccct 296  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  28149093 acttggagaaactgatactgccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaacaaaaggcatttccct 28149192  T
Q  297 catttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataa 396  Q
    || ||||||||| ||||||||  |||||||||||| ||||||||  ||||||| ||||||||||||||||  || ||||||||||||| ||  |||||||    
T  28149193 ca-ttttgctagtattcttttgaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataa 28149291  T
Q  397 gtgttgaaaaaggaac 412  Q
    ||| |||| |||||||    
T  28149292 gtgctgaagaaggaac 28149307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 28510036 - 28509767
Alignment:
Q  11 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 110  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| ||||||||||||||||   |||||  || |    
T  28510036 cagagacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaattgtgttagaatttga 28509937  T
Q  111 atggatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 207  Q
    ||||||||||||||||  |||   | |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||     
T  28509936 atggatgtaattaatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatgaacaatcgatggagcaacaacgtctacttggagaag 28509837  T
Q  208 ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagct 277  Q
    | |||  ||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||    
T  28509836 ccgattctgccgtcaaaccttctcaggtaaatcaagtaatatcgtaccaccgcattgtgcatataaagct 28509767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 28184771 - 28185043
Alignment:
Q  11 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 110  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| |||||||||||||| | | |||||  ||||    
T  28184771 cagagacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaactgcgttagaatttta 28184870  T
Q  111 atggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 207  Q
    ||||||||||||||||  |   |||||||| ||||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||||| ||||||||||     
T  28184871 atggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcaatggagcagcaacgtctacttggagaac 28184970  T
Q  208 ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    |||||| | ||||||||||||||||||||||||||||||| || ||| ||||| ||| |||||||||||||||    
T  28184971 ctgatactaccgtcaaaccttctcaggtaaatcatgtaatgtcgtaccaccgcgttgtgcatataaagctaaa 28185043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 28480853 - 28480584
Alignment:
Q  11 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 110  Q
    |||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| || | || |||| ||||||||||||||||   |||||  || |    
T  28480853 cagaaacagagcatgaacttgtggaaaatgttactgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaattgtgttagaatttga 28480754  T
Q  111 atggatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 207  Q
    ||||||||||||||||  |||   | |||||||||||||| |||||||||||||||||||||| || |||| ||| |||||||||||| ||||||||||     
T  28480753 atggatgtaattaatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatcaacaatctatggagcaacaacgtctacttggagaag 28480654  T
Q  208 ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagct 277  Q
    | |||| | |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||    
T  28480653 ccgatactcccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcataaaaagct 28480584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 28082712 - 28082981
Alignment:
Q  14 agacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatg 113  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| ||||||||||| |||| | |||||  |||||||    
T  28082712 agacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcgaattgccttagaattttaatg 28082811  T
Q  114 gatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg 210  Q
    ||||| || |||   |||   || ||||||||| ||||||||| ||||||||||||||||||| || | ||| | |||||||||| | ||||||||||||    
T  28082812 gatgttatgaatcgctgaagatcgttaatgcttctgttcttgtaacaggagttgatgaatgaacaaacaatggaccaacaacgtctagttggagaaactg 28082911  T
Q  211 atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    ||| |||||||||||||| |||||||||||||| |||||| ||| |   ||||| |||||||||||||||    
T  28082912 atactgccgtcaaaccttttcaggtaaatcatgcaatatcataccaatacattgtgcatataaagctaaa 28082981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 28160219 - 28160424
Alignment:
Q  11 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 110  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| || | || |||| |||||||||||||| | | |||||  ||||    
T  28160219 cagagacagagcatgaacttgtggaaaatgttcccgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaactgcgttagaatttta 28160318  T
Q  111 atggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 207  Q
    ||||||||||||||||  |   |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| | || ||||||| ||||||||||     
T  28160319 atggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcgatggaacagcaacgtctacttggagaac 28160418  T
Q  208 ctgata 213  Q
    ||||||    
T  28160419 ctgata 28160424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 130 - 246
Target Start/End: Original strand, 28134729 - 28134845
Alignment:
Q  130 gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| |||||||||||||||||| | |||||||||||||    
T  28134729 gatcattaatgcttatgttcttgttacaggagttgatgaatgaacaatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttc 28134828  T
Q  230 tcaggtaaatcatgtaa 246  Q
    ||||||||||| |||||    
T  28134829 tcaggtaaatcgtgtaa 28134845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 316 - 420
Target Start/End: Original strand, 28083057 - 28083161
Alignment:
Q  316 tttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactac 415  Q
    |||||||||||||||| ||||||||  ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  28083057 tttgacactttgtcaatgcaggaattgaattatactacaatcttaaacatctttctaattttaagcaggttagtgaaataagtgttgaagaaggaactac 28083156  T
Q  416 atcag 420  Q
    |||||    
T  28083157 atcag 28083161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 28135423 - 28135533
Alignment:
Q  310 attctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaagg 409  Q
    |||| ||||||||||||||||| |||||| |  ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  28135423 attcattttgacactttgtcaatgcaggagttgaattatactacaatcttaaaaatcttttaaattttaagcaggttagtgaaataagtgttgaagaagg 28135522  T
Q  410 aactacatcag 420  Q
    |||||||||||    
T  28135523 aactacatcag 28135533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 302 - 415
Target Start/End: Original strand, 28161391 - 28161504
Alignment:
Q  302 ttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgtt 401  Q
    ||||||| |||||||||||||||||||| | ||||||||  | ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28161391 ttgctagtattctttttgacactttgtctatgcaggaattgacttatactacaatcttaaacatctttttaattttaagcaggttagcgaaataagtgtt 28161490  T
Q  402 gaaaaaggaactac 415  Q
    ||| ||||||||||    
T  28161491 gaagaaggaactac 28161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 302 - 415
Target Start/End: Original strand, 28185233 - 28185346
Alignment:
Q  302 ttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgtt 401  Q
    ||||||| |||||||||||||||||||| | ||||||||  | ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28185233 ttgctagtattctttttgacactttgtctatgcaggaattgacttatactacaatcttaaacatctttttaattttaagcaggttagcgaaataagtgtt 28185332  T
Q  402 gaaaaaggaactac 415  Q
     || ||||||||||    
T  28185333 caagaaggaactac 28185346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 210 - 420
Target Start/End: Complemental strand, 28507104 - 28506906
Alignment:
Q  210 gatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaacaaaaggcatttccctcatttttgctagc 309  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||| ||| ||||| |||||            |||||||||||||||||||| || ||     
T  28507104 gatactgccgtcaaaccttctccggtaaatcatgtaatatcgtaccaccacattgtgcata------------aaaggcatttccctcatttt-gcaagt 28507018  T
Q  310 attctttttgacactttgtcaaggcaggaataaaattatagt-acaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaag 408  Q
    ||||||||||||||||||||||| ||||| |  ||||||| | | | | ||||||||| ||  ||||||||||||||||||||||||||||| |||||||    
T  28507017 attctttttgacactttgtcaagccaggagttgaattatactaatatttttaaacatccttgtaattttaagcaggttagtgaaataagtgtcgaaaaag 28506918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 28054393 - 28054652
Alignment:
Q  18 agagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatggatg 117  Q
    |||| |||||||| | |||||||||||   |||| |||||||||||||  |||| |||||||||||||||||  |||||||||||| |||||||||||||    
T  28054393 agagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaaaattccattagttatttaatggatg 28054492  T
Q  118 taattaata---tttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatat 214  Q
    |||||||||      |||| |||| |||| ||||||| |||||      |||  |||||  || |||| ||||||  | || | ||||||||| |||||     
T  28054493 taattaatagcggaagatcgttaaagcttttgttcttattaca------gatccatgaactattgatgaagcaacttcatcaatttggagaaattgatac 28054586  T
Q  215 tgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    ||||||||||||||||||||||||||||||| |||  ||| || |||| | |||||||||| ||||    
T  28054587 tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaa 28054652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 28064818 - 28065077
Alignment:
Q  18 agagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatggatg 117  Q
    |||| |||||||| | |||||||||||   |||| |||||||||||||  |||| |||||||||||||||||  |||||||||||| |||||||||||||    
T  28064818 agagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaaaattccattagttatttaatggatg 28064917  T
Q  118 taattaata---tttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatat 214  Q
    |||||||||      |||| |||| |||| ||||||| |||||      |||  |||||  || |||| ||||||  | || | ||||||||| |||||     
T  28064918 taattaatagcggaagatcgttaaagcttttgttcttattaca------gatccatgaactattgatgaagcaacttcatcaatttggagaaattgatac 28065011  T
Q  215 tgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    ||||||||||||||||||||||||||||||| |||  ||| || |||| | |||||||||| ||||    
T  28065012 tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaa 28065077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 27979596 - 27979733
Alignment:
Q  143 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat 242  Q
    ||||||||| ||||||||||||||| ||||| ||   ||| |||||||||||||||||||||||||||||  | |||||||||||||||  | |||| ||    
T  27979596 tatgttcttattacaggagttgatggatgaacaacaaatggagcaacaacgtccacttggagaaactgatgctaccgtcaaaccttctccagaaaataat 27979695  T
Q  243 gtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    |||||||  ||| ||| ||||| | |||||||||||||    
T  27979696 gtaatatagtaccacctcattgtgaatataaagctaaa 27979733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 28149344 - 28149415
Alignment:
Q  419 aggtccattatgtacttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaa 490  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  28149344 aggtccattatctacttctaagcataaaacatcttcacaggtgagtttattatatataacaaagccttcaaa 28149415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 8539750 - 8539640
Alignment:
Q  310 attctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaagg 409  Q
    ||||||||| |||||||  ||| ||||||||  ||||||| ||||||| |||||||   || ||||||||||||| |  |||||||||||||||| ||||    
T  8539750 attctttttaacacttttccaatgcaggaattgaattatactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaagg 8539651  T
Q  410 aactacatcag 420  Q
    |||||||||||    
T  8539650 aactacatcag 8539640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 11420153 - 11420238
Alignment:
Q  143 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaacctt 228  Q
    ||||||| | ||||||||||||||||||||| || | ||| ||||||||||||||||||| |||||||||  | ||||||||||||    
T  11420153 tatgttcatattacaggagttgatgaatgaacaaccaatggagcaacaacgtccacttggtgaaactgatgctaccgtcaaacctt 11420238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 27379345 - 27379485
Alignment:
Q  278 aaacaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaatttt 377  Q
    ||||||||||||||||||| |||||   ||| ||||| |||||||| || |||| |||| |||  ||||||| |||||||||||||||| ||| ||| ||    
T  27379345 aaacaaaaggcatttcccttattttct-tagtattctgtttgacacattttcaatgcagtaattgaattatactacaatcttaaacatccttttaatatt 27379443  T
Q  378 aagcaggttagtgaaataagtgttgaaaaaggaactacatca 419  Q
     |||||| || ||| ||||||  |||| ||||||||||||||    
T  27379444 tagcagggtaatgagataagttctgaagaaggaactacatca 27379485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 28151056 - 28151193
Alignment:
Q  143 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat 242  Q
    |||||||||  |||||||||||||||||||| ||   ||| ||||| |||||| || |||||||| ||||  | |||||||||||||||| | |||| ||    
T  28151056 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 28151155  T
Q  243 gtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    |||||||  ||| ||| ||||| ||||||||| |||||    
T  28151156 gtaatatagtaccacctcattgtgcatataaatctaaa 28151193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 406
Target Start/End: Complemental strand, 18077184 - 18077088
Alignment:
Q  310 attctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaa 406  Q
    |||||||||||| |||| |||| ||| ||||  ||||||| |||||||||||||||| |||  ||||||||||||| |  |||||||||||||||||    
T  18077184 attctttttgactctttttcaaagcaagaattgaattatactacaatcttaaacatcctttttattttaagcaggtcaacgaaataagtgttgaaaa 18077088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 18079237 - 18079162
Alignment:
Q  343 aattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatc 418  Q
    ||||||| |||| ||||||||||| ||  ||||||||||||||||  |||||||||||||||||||||||| ||||    
T  18079237 aattatactacagtcttaaacatccttctaattttaagcaggttaacgaaataagtgttgaaaaaggaacttcatc 18079162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 27390772 - 27390666
Alignment:
Q  277 taaacaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattt 376  Q
    |||||||||||||||||| ||  ||||||  | ||| ||| ||| ||||| |||| |||||||| |||||||| |||||||||||||||| ||| |||||    
T  27390772 taaacaaaaggcatttcc-tctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 27390674  T
Q  377 taagcagg 384  Q
    ||||||||    
T  27390673 taagcagg 27390666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 27919514 - 27919605
Alignment:
Q  189 caacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    ||||||||||||||||||| ||||| | |||||||||||||||| | |||| |||||||||  ||| ||| ||||| | |||||||||||||    
T  27919514 caacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaa 27919605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 157 - 280
Target Start/End: Original strand, 28003328 - 28003451
Alignment:
Q  157 aggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaa 256  Q
    ||||||||||||||||| ||   ||| ||||| |||||| ||||||||||||||||  | |||||||||||||||| | |||| |||||||||  ||| |    
T  28003328 aggagttgatgaatgaacaagaaatggagcaaaaacgtctacttggagaaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtacca 28003427  T
Q  257 ccgcattgcgcatataaagctaaa 280  Q
    || ||| | ||||||||| |||||    
T  28003428 cctcatcgtgcatataaatctaaa 28003451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 17745112 - 17745002
Alignment:
Q  310 attctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaagg 409  Q
    ||||||||| || |||||||||   ||||||  ||||| | ||||||||||||||||| || |||| |||||||| ||  ||||||||||||||| ||||    
T  17745112 attctttttcactctttgtcaataaaggaattgaattaaactacaatcttaaacatctgtttaattataagcagggtaacgaaataagtgttgaagaagg 17745013  T
Q  410 aactacatcag 420  Q
    ||| |||||||    
T  17745012 aaccacatcag 17745002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 19046432 - 19046322
Alignment:
Q  310 attctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaagg 409  Q
    ||||||||| || |||||||||   ||||||  ||||| | ||||||||||||||||| || |||| |||||||| ||  ||||||||||||||| ||||    
T  19046432 attctttttcactctttgtcaataaaggaattgaattaaactacaatcttaaacatctgtttaattataagcagggtaacgaaataagtgttgaagaagg 19046333  T
Q  410 aactacatcag 420  Q
    ||| |||||||    
T  19046332 aaccacatcag 19046322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 27979884 - 27980027
Alignment:
Q  276 ctaaacaaaaggcatttccctcatttttgctagcattctttt---tgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttca 372  Q
    |||||||||| |||| ||||| |||||| || | ||||||||   | ||||||| |||| ||||||||  | ||||| |||||||| ||||||| ||| |    
T  27979884 ctaaacaaaaagcatctccctaattttt-cttgtattcttttaatttacactttttcaatgcaggaattgagttatactacaatctcaaacatcctttta 27979982  T
Q  373 attttaagcaggttagtgaaataagtgttgaaaaaggaactacat 417  Q
    |||||||||||| ||  || |||||||||||| ||||||||||||    
T  27979983 attttaagcagggtatcgagataagtgttgaagaaggaactacat 27980027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 420
Target Start/End: Original strand, 27919756 - 27919900
Alignment:
Q  276 ctaaacaaaaggcatttccc-tcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaat 374  Q
    |||||||||||||||||||| |||||||| || | ||| ||||| ||||||| |||| | ||||||  ||||||| ||||||||| ||||||  || |||    
T  27919756 ctaaacaaaaggcatttcccctcattttt-cttgtattatttttaacactttttcaatgtaggaattgaattatactacaatcttcaacatccatttaat 27919854  T
Q  375 tttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 420  Q
    |||||||||| ||   ||||| |||||||| ||||||  |||||||    
T  27919855 tttaagcagggtatcaaaatatgtgttgaagaaggaatcacatcag 27919900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 28054936 - 28055031
Alignment:
Q  280 acaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattt 376  Q
    |||||||||||||||| |   |||||| | ||| ||||| |||||||||||| ||||||||  ||||||| |||||||||||||||||||| |||||    
T  28054936 acaaaaggcatttccc-ctgatttgcttgtattttttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatctttttaattt 28055031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 28065361 - 28065456
Alignment:
Q  280 acaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattt 376  Q
    |||||||||||||||| |   |||||| | ||| ||||| |||||||||||| ||||||||  ||||||| |||||||||||||||||||| |||||    
T  28065361 acaaaaggcatttccc-ctgatttgcttgtattttttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatctttttaattt 28065456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 28161137 - 28161201
Alignment:
Q  216 gccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    |||||||||||||||||||||||||||||||| || ||  ||||| ||| |||||||||||||||    
T  28161137 gccgtcaaaccttctcaggtaaatcatgtaatgtcgtaacaccgcgttgtgcatataaagctaaa 28161201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 314 - 420
Target Start/End: Original strand, 28036886 - 28036992
Alignment:
Q  314 tttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaact 413  Q
    |||||||||| || |||| | ||||||  ||||||| ||||||||||||||||  || ||||||||||||| ||  ||||||||||||  | |||||||     
T  28036886 tttttgacaccttttcaatgtaggaattgaattatactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttttagaaggaaca 28036985  T
Q  414 acatcag 420  Q
    |||||||    
T  28036986 acatcag 28036992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 26630752 - 26630895
Alignment:
Q  276 ctaaacaaaaggcatttccctcatttttgctagcattcttttt-gacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaat 374  Q
    ||||||||||||||||||||  ||||| ||| | ||||||||| ||| |||| | || ||||||||  ||||||| ||||| | |||  ||| ||  |||    
T  26630752 ctaaacaaaaggcatttcccctatttt-gcttgtattcttttttgactcttttttaatgcaggaattgaattatattacaaacctaagtatccttataat 26630850  T
Q  375 tttaagcaggttagtgaaataagtgttgaaaaaggaactacatca 419  Q
    |||||||||||||  || |||||||||||| |||||| |||||||    
T  26630851 tttaagcaggttatcgagataagtgttgaagaaggaagtacatca 26630895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 27350005 - 27350094
Alignment:
Q  276 ctaaacaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatc 366  Q
    ||||||||||||||||||||| | |||| |||| ||||| || ||||| || |||| |||| |||  ||||||| ||||||||||||||||    
T  27350005 ctaaacaaaaggcatttccctta-ttttcctagtattctgttggacacattttcaatgcagtaattgaattatactacaatcttaaacatc 27350094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 28185372 - 28185413
Alignment:
Q  447 acatcttcacaggtgagtatattttatttaacaaagccttca 488  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  28185372 acatcatcacaggtgagtttattttatttaacaaagccttca 28185413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 17745397 - 17745345
Alignment:
Q  197 acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat 249  Q
    ||||||||||||||||  | |||||||||||||||||| |||| |||||||||    
T  17745397 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatat 17745345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 19046717 - 19046665
Alignment:
Q  197 acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat 249  Q
    ||||||||||||||||  | |||||||||||||||||| |||| |||||||||    
T  19046717 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatat 19046665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 26114141 - 26114053
Alignment:
Q  186 caacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaa 274  Q
    ||||||| |||||||||||||||||||| | || ||||||||||||| | | || |||||||||  ||| | | ||||| |||||||||    
T  26114141 caacaacatccacttggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatataaa 26114053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 28005314 - 28005390
Alignment:
Q  343 aattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatca 419  Q
    ||||||| |||||||| ||||||| ||  ||||||||||||| ||  || | |||||||||| ||||||||||||||    
T  28005314 aattatactacaatctcaaacatccttctaattttaagcagggtatcgagaaaagtgttgaagaaggaactacatca 28005390  T

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Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 28036606 - 28036694
Alignment:
Q  192 cgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    |||||||||||||||||||||  | |||||||| ||||||  | |||| | |||||||  ||| ||| ||||| |||||||||||||||    
T  28036606 cgtccacttggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtaccacctcattgtgcatataaagctaaa 28036694  T

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Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 28055908 - 28055952
Alignment:
Q  372 aattttaagcaggttagtgaaataagtgttgaaaaaggaactaca 416  Q
    ||||||||||||||||| |||||||||||| || |||||||||||    
T  28055908 aattttaagcaggttagcgaaataagtgttcaagaaggaactaca 28055952  T

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Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 28066333 - 28066377
Alignment:
Q  372 aattttaagcaggttagtgaaataagtgttgaaaaaggaactaca 416  Q
    ||||||||||||||||| |||||||||||| || |||||||||||    
T  28066333 aattttaagcaggttagcgaaataagtgttcaagaaggaactaca 28066377  T

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Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 490
Target Start/End: Original strand, 27919936 - 27919991
Alignment:
Q  435 tctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaa 490  Q
    |||||| | |||||| |||||||||| ||| |||||||||||| ||||||||||||    
T  27919936 tctaagcataaaacaacttcacaggtcagtttattttatttaataaagccttcaaa 27919991  T

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Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 28151336 - 28151375
Alignment:
Q  381 caggttagtgaaataagtgttgaaaaaggaactacatcag 420  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  28151336 caggttagcgaaataagtgttgaagaaggaactacatcag 28151375  T

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Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 490
Target Start/End: Complemental strand, 27390627 - 27390569
Alignment:
Q  432 acttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaa 490  Q
    ||||||||||| | |||| |||||||||||| | |||||||| |||||| |||||||||    
T  27390627 acttctaaggaaataacaacttcacaggtgattttattttatgtaacaatgccttcaaa 27390569  T

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Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 27459810 - 27459748
Alignment:
Q  187 aacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat 249  Q
    ||||| ||||||||| ||||||||||  |  ||||||||||||||||| |||| |||||||||    
T  27459810 aacaatgtccacttgcagaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatat 27459748  T

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Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 27249896 - 27249948
Alignment:
Q  431 tacttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagc 483  Q
    |||||||||| | |||||| |||||||||||||| ||||| || |||||||||    
T  27249896 tacttctaagcataaaacaacttcacaggtgagtttatttcatgtaacaaagc 27249948  T

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Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 8693052 - 8692902
Alignment:
Q  130 gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttc 229  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||| |||||||||    
T  8693052 gatcattaatgcttctgttcttgttacaggaattgatgaatgaacaatcgatggacaaacaacgtccacttggagaaactgatattgccggcaaaccttc 8692953  T
Q  230 tcaggtaaatcatgtaatatcctacaaccgcattgcgcatataaagctaaa 280  Q
    ||||||||||||||||||||| ||| || |||||| |||||||||||||||    
T  8692952 tcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaa 8692902  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 8692724 - 8692622
Alignment:
Q  302 ttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgtt 401  Q
    ||||||| ||||||||||||| |||||||| | | ||||  ||||||| | |||||||||||||||||| |||||||| |||||||| |||| |||||||    
T  8692724 ttgctagtattctttttgacattttgtcaatgaaagaattgaattatactgcaatcttaaacatctttttaattttaatcaggttagcgaaacaagtgtt 8692625  T
Q  402 gaa 404  Q
    |||    
T  8692624 gaa 8692622  T

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Target: scaffold0043 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 52083 - 51943
Alignment:
Q  278 aaacaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaatttt 377  Q
    ||||||||||||||||||| |||||   ||| ||||| || ||||| || |||| |||| |||  ||||||| |||||||||||||||| ||| ||| ||    
T  52083 aaacaaaaggcatttcccttattttct-tagtattctgttggacacattttcaatgcagtaattgaattatactacaatcttaaacatccttttaatatt 51985  T
Q  378 aagcaggttagtgaaataagtgttgaaaaaggaactacatca 419  Q
     |||||| ||| || |||||| ||||| ||||||||||||||    
T  51984 tagcagggtagcgagataagttttgaagaaggaactacatca 51943  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 22394321 - 22394463
Alignment:
Q  276 ctaaacaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaatt 375  Q
    ||||||||||||||||||||| |||||  |||| ||||| || ||||| || |||| |||| |||  ||||||| |||||||||||||||  ||| |||     
T  22394321 ctaaacaaaaggcatttcccttattttc-ctagtattctgttggacacattttcaatgcagtaattgaattatactacaatcttaaacatgcttttaatg 22394419  T
Q  376 ttaagcaggttagtgaaataagtgttgaaaaaggaactacatca 419  Q
    || |||||| || ||| |||||| ||||| ||||||| ||||||    
T  22394420 tttagcagggtaatgagataagttttgaagaaggaacaacatca 22394463  T

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Target: scaffold1142 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 1476 - 1612
Alignment:
Q  282 aaaaggcatttccctcatttttgctagcattctttttgacactttgtcaaggcaggaataaaattatagtacaatcttaaacatcttttcaattttaagc 381  Q
    ||||||||||||||| || ||| |||| |||||||||||| | || |||| ||||||||  || |||| |||||||||||||||  ||| | | || |||    
T  1476 aaaaggcatttcccttatattt-ctagtattctttttgacgccttttcaatgcaggaattgaaatatactacaatcttaaacattcttttattgtttagc 1574  T
Q  382 aggttagtgaaataagtgttgaaaaaggaactacatca 419  Q
    ||| ||  || || ||||||||| ||||||||||||||    
T  1575 agggtaacgagatgagtgttgaagaaggaactacatca 1612  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 9328837 - 9328781
Alignment:
Q  364 atcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 420  Q
    |||||||  |||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  9328837 atcttttttattttaagcaggttagcgaaataagtgttgaagaaggaactgcatcag 9328781  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 9382614 - 9382558
Alignment:
Q  364 atcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 420  Q
    |||||||  |||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  9382614 atcttttttattttaagcaggttagcgaaataagtgttgaagaaggaactgcatcag 9382558  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Complemental strand, 9328751 - 9328716
Alignment:
Q  455 acaggtgagtatattttatttaacaaagccttcaaa 490  Q
    |||||||||| |||||||||||||||||||||||||    
T  9328751 acaggtgagtttattttatttaacaaagccttcaaa 9328716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Complemental strand, 9382528 - 9382493
Alignment:
Q  455 acaggtgagtatattttatttaacaaagccttcaaa 490  Q
    |||||||||| |||||||||||||||||||||||||    
T  9382528 acaggtgagtttattttatttaacaaagccttcaaa 9382493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 5 - 73
Alignment:
Q  351 tacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatca 419  Q
    |||||||||||||||| ||| ||| || |||||| ||| || |||||| ||||| ||||||||||||||    
T  5 tacaatcttaaacatccttttaatatttagcagggtagcgagataagttttgaagaaggaactacatca 73  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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