View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2029_low_2 (Length: 520)

Name: NF2029_low_2
Description: NF2029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2029_low_2
NF2029_low_2
[»] chr7 (2 HSPs)
chr7 (1-513)||(43016067-43016580)
chr7 (364-491)||(12489526-12489652)
[»] chr3 (3 HSPs)
chr3 (365-493)||(33890447-33890571)
chr3 (400-485)||(35495337-35495422)
chr3 (392-429)||(35596328-35596365)
[»] chr1 (3 HSPs)
chr1 (363-510)||(31123245-31123390)
chr1 (417-469)||(29500361-29500413)
chr1 (394-426)||(10147608-10147640)
[»] chr2 (4 HSPs)
chr2 (362-502)||(11361737-11361878)
chr2 (392-429)||(23899196-23899233)
chr2 (392-429)||(23889595-23889632)
chr2 (392-429)||(23893671-23893708)
[»] chr8 (3 HSPs)
chr8 (363-469)||(40499432-40499540)
chr8 (20-58)||(18309856-18309893)
chr8 (20-58)||(23735641-23735678)
[»] chr4 (3 HSPs)
chr4 (363-485)||(23112121-23112241)
chr4 (392-429)||(37877973-37878010)
chr4 (364-423)||(12105400-12105460)
[»] chr6 (1 HSPs)
chr6 (355-469)||(14526827-14526943)


Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 43016067 - 43016580
Alignment:
Q  1 gcataaatgcttctgaaataataaaatcaatgatggaaaatgaagatgaaaattgagatactagcgaaaacttcacactcactttgattcagtttaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  43016067 gcataaatgcttctgaaataataaaatcaatgatggaaaatgaagatgaaaattgagatattagcgaaaacttcacactcactttgatttagtttaatga 43016166  T
Q  101 agaaaaagaagcacaaacttcacacgttatgaagatggataaaagttgaaagaataaatagttgagaatgttgnnnnnnnnagagagaattttgttgtgt 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||     
T  43016167 agaaaaagaagcacaaacttcacacattatgaagatggataaaagttgaaagaataaatagttgagaatgttgttttttttagagagaattttgttgtgc 43016266  T
Q  201 gtgtttgataaaaaagatcaagtgaataaatattagtggaagacgaaaacttgaccaaaataaccaaatttattcgttttttgttgaccgaaagcgatcg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  43016267 gtgtttgataaaaaagatcaagtgaataaatattagtggaagacgaaaacttgaccaaaataaccaaatttattcattttttgttgaccgaaagcgaccg 43016366  T
Q  301 gaatttgttagtattatgtacgggcggaattattcgctacatgcatatctgactgttattattaggaaaaagatacatagaccaccatttgtgtacacac 400  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43016367 gaatttgttagtattatgtacggacggaattattcgctgcatgcatatctgactgttattattaggaaaaagatacatagaccaccatttgtgtacccac 43016466  T
Q  401 tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttggtag-ttttactcacaaccacacaattttcttctcttcc 499  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  43016467 tttgtaccactgctgatgtggcaggggtagattgctaatttcatatgctaggggtagtttggtagtttttactcacaaccacacaatttttttctcttcc 43016566  T
Q  500 tctcctctgtgctc 513  Q
    ||||||||||||||    
T  43016567 tctcctctgtgctc 43016580  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 364 - 491
Target Start/End: Original strand, 12489526 - 12489652
Alignment:
Q  364 aggaaaaagatacatagaccaccatttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttgg 462  Q
    ||||||||||||||||||||||  ||  | ||||| | ||||||||||||||| |||||||||||||| |||||||||||  |||| |  ||||||||||    
T  12489526 aggaaaaagatacatagaccacttttaatatacacccctttgtaccactgctgatgtggcaggggtagtttggtaatttc--atgcaataggtagtttgg 12489623  T
Q  463 tagttttactcacaaccacacaattttct 491  Q
    || ||| ||||||||||||||||| ||||    
T  12489624 taatttcactcacaaccacacaatcttct 12489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 365 - 493
Target Start/End: Complemental strand, 33890571 - 33890447
Alignment:
Q  365 ggaaaaagatacatagaccaccatttgtgtacacactttgtaccactgctgttgtggcaggggtagattg--gtaatttcatatgctaggggtagtttgg 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||      | ||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  33890571 ggaaaaagatacatagaccaccatttgtgtacacactttgtacc------gatgtggcaggggtagattgtggtaattttatatgctaggggtagtttgg 33890478  T
Q  463 tagttttactcacaaccacacaattttcttc 493  Q
    ||||||||||||||||||||||||| |||||    
T  33890477 tagttttactcacaaccacacaattctcttc 33890447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 35495337 - 35495422
Alignment:
Q  400 ctttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttggtagttttactcacaaccacacaa 485  Q
    ||||| |||||||||| ||||| |||||||| |||||||||||||    ||| |||||||||||||||| ||| ||||||||||||    
T  35495337 ctttgcaccactgctgatgtggtaggggtagtttggtaatttcatgcaatagaggtagtttggtagtttcacttacaaccacacaa 35495422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 35596365 - 35596328
Alignment:
Q  392 tgtacacactttgtaccactgctgttgtggcaggggta 429  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  35596365 tgtacactctttgtaccactgctgatgtggcaggggta 35596328  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 510
Target Start/End: Original strand, 31123245 - 31123390
Alignment:
Q  363 taggaaaaagatacatagaccaccatttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttg 461  Q
    |||||||||||||  ||||||||  | ||| ||||| | |||||| |||||||| |||||||| ||||| |||||||||||| |   |||||||||||||    
T  31123245 taggaaaaagataggtagaccactctatgtttacactcctttgtatcactgctgatgtggcagaggtagtttggtaatttcacacaataggggtagtttg 31123344  T
Q  462 gtagttttactcacaaccacacaattttcttctcttcctctcctctgtg 510  Q
    ||||||| | ||||||||||||||   |||||||||||| | |||||||    
T  31123345 gtagtttcattcacaaccacacaa---tcttctcttcctattctctgtg 31123390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 29500413 - 29500361
Alignment:
Q  417 tgtggcaggggtagattggtaatttcatatgctaggggtagtttggtagtttt 469  Q
    |||||||||||||| ||||||||||||  || ||||| |||||||||||||||    
T  29500413 tgtggcaggggtagtttggtaatttcacgtgttagggatagtttggtagtttt 29500361  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 426
Target Start/End: Complemental strand, 10147640 - 10147608
Alignment:
Q  394 tacacactttgtaccactgctgttgtggcaggg 426  Q
    |||||||||||||||||||||| ||||||||||    
T  10147640 tacacactttgtaccactgctgatgtggcaggg 10147608  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 502
Target Start/End: Complemental strand, 11361878 - 11361737
Alignment:
Q  362 ttaggaaaaagatacatagaccaccatttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagttt 460  Q
    ||||||||||||||||||||||||  ||  | | ||| | ||| ||||||||||| ||||||||||  || |||||| |||||     || |||||||||    
T  11361878 ttaggaaaaagatacatagaccacttttaatatccacccctttataccactgctgatgtggcagggacagtttggtagtttcacgcaatatgggtagttt 11361779  T
Q  461 ggtagttttactcacaaccacacaattttcttctcttcctct 502  Q
    | |||||| |||||||||||||||| ||||| | ||||||||    
T  11361778 gatagtttcactcacaaccacacaactttctccccttcctct 11361737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 23899233 - 23899196
Alignment:
Q  392 tgtacacactttgtaccactgctgttgtggcaggggta 429  Q
    |||||||||||||||||||||||| |||||||||||||    
T  23899233 tgtacacactttgtaccactgctgatgtggcaggggta 23899196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 23889632 - 23889595
Alignment:
Q  392 tgtacacactttgtaccactgctgttgtggcaggggta 429  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  23889632 tgtacactctttgtaccactgctgatgtggcaggggta 23889595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 23893708 - 23893671
Alignment:
Q  392 tgtacacactttgtaccactgctgttgtggcaggggta 429  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  23893708 tgtacactctttgtaccactgctgatgtggcaggggta 23893671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 469
Target Start/End: Original strand, 40499432 - 40499540
Alignment:
Q  363 taggaaaaagatacatagaccac-catttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagttt 460  Q
    ||||||||||||||||||||||| | ||| | ||| | | |||| |||||||||| |||||||||||||| ||| ||||||||   | ||||| ||||||    
T  40499432 taggaaaaagatacatagaccactcttttctatacgcccctttgcaccactgctgatgtggcaggggtagtttgataatttcacgcgatagggatagttt 40499531  T
Q  461 ggtagtttt 469  Q
    |||||||||    
T  40499532 ggtagtttt 40499540  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 18309856 - 18309893
Alignment:
Q  20 aataaaatcaatgatggaaaatgaagatgaaaattgaga 58  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  18309856 aataaaatcaatgatg-aaaatgaagatgaaaattgaga 18309893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 23735641 - 23735678
Alignment:
Q  20 aataaaatcaatgatggaaaatgaagatgaaaattgaga 58  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  23735641 aataaaatcaatgatg-aaaatgaagatgaaaattgaga 23735678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 485
Target Start/End: Original strand, 23112121 - 23112241
Alignment:
Q  363 taggaaaaagatacatagaccaccatttgtgtacacactttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttgg 462  Q
    |||||||||||||||||||||||  | |   || || |||||||||||||||| ||||| |||||| | ||| ||||||||     ||| ||||||||||    
T  23112121 taggaaaaagatacatagaccac--tctcaatataccctttgtaccactgctgatgtggtaggggtggtttgataatttcacgcaatagaggtagtttgg 23112218  T
Q  463 tagttttactcacaaccacacaa 485  Q
    |||||| ||| ||||||||||||    
T  23112219 tagtttcacttacaaccacacaa 23112241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 37877973 - 37878010
Alignment:
Q  392 tgtacacactttgtaccactgctgttgtggcaggggta 429  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  37877973 tgtacactctttgtaccactgctgatgtggcaggggta 37878010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 12105460 - 12105400
Alignment:
Q  364 aggaaaaagatacatagaccaccatttgtgtacacac-tttgtaccactgctgttgtggca 423  Q
    ||||||||||||||||||||||| |||  |||||| | ||| ||||||||||| |||||||    
T  12105460 aggaaaaagatacatagaccacccttttggtacacccttttataccactgctgatgtggca 12105400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 469
Target Start/End: Complemental strand, 14526943 - 14526827
Alignment:
Q  355 gttattattaggaaaaagatacatagaccac-catttgtgtaca-cactttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctagg 452  Q
    ||||||| | ||||||||||||||||||||| | ||| | |||| | |||||||||| || || |||  ||||||||| ||||||||||||   |||||     
T  14526943 gttattaattggaaaaagatacatagaccactcttttctatacacccctttgtaccagtgttgatgttacaggggtagtttggtaatttcacgcgctagt 14526844  T
Q  453 ggtagtttggtagtttt 469  Q
    | ||||||| |||||||    
T  14526843 gatagtttgatagtttt 14526827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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