View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2029_low_3 (Length: 376)
Name: NF2029_low_3
Description: NF2029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2029_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 71 - 310
Target Start/End: Original strand, 1247446 - 1247688
Alignment:
| Q |
71 |
cgtctccatgaaaagatagcactggtctctaaaatactattatcacacaaataattttagtctttattgttaatttaacatatgtttatgaatatttttc |
170 |
Q |
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| T |
1247446 |
cgtctccatgaaaagatagcactggtctctaaaatactattatcacacaaataattttagtctttcttgttaatttaacatatgtttttgaatgtttttc |
1247545 |
T |
|
| Q |
171 |
tttggagatatttagaacattataaaatgctcatatgcaaaatttagaaattttaaatatcagataaattaaatatgaatttttcaaacttcaagaactc |
270 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1247546 |
tttggacatatttagaacattataaaatgctcatatgcaaaatttaaaaattttaaacatcagataaattaaatatgaatttttcaaacgtcaagaactc |
1247645 |
T |
|
| Q |
271 |
aagat---aaaaaaatttaaccaagaaatcaaattttaaactc |
310 |
Q |
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| T |
1247646 |
aagataaaaaaaaaaattaaccaagaaatcaaattttaaactc |
1247688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 5695997 - 5696042
Alignment:
| Q |
209 |
aaaatttagaaattttaaatatcagataaattaaatatgaattttt |
254 |
Q |
| |
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||||||||||| |||| ||||| |||| |||||||||||||||||| |
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| T |
5695997 |
aaaatttagaattttttaatatgagatgaattaaatatgaattttt |
5696042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 41927925 - 41927970
Alignment:
| Q |
209 |
aaaatttagaaattttaaatatcagataaattaaatatgaattttt |
254 |
Q |
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| T |
41927925 |
aaaatttagaactttttaatatgaaataaattaaatatgaattttt |
41927970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 32318426 - 32318381
Alignment:
| Q |
209 |
aaaatttagaaattttaaatatcagataaattaaatatgaattttt |
254 |
Q |
| |
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||||||||||| |||| ||||| | ||||||||||||||||||||| |
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| T |
32318426 |
aaaatttagaattttttaatatgaaataaattaaatatgaattttt |
32318381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 44452893 - 44452937
Alignment:
| Q |
210 |
aaatttagaaattttaaatatcagataaattaaatatgaattttt |
254 |
Q |
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|||||||||| |||| ||||| | ||||||||||||||||||||| |
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| T |
44452893 |
aaatttagaattttttaatatgaaataaattaaatatgaattttt |
44452937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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