View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2029_low_4 (Length: 353)
Name: NF2029_low_4
Description: NF2029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2029_low_4 |
 | |
|
| [»] scaffold0076 (2 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0076 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 125 - 334
Target Start/End: Original strand, 47786 - 47994
Alignment:
| Q |
125 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
47786 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctggagacaatagattggactttcat |
47884 |
T |
|
| Q |
225 |
ccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47885 |
ccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacat |
47984 |
T |
|
| Q |
325 |
caacccggtt |
334 |
Q |
| |
|
|||||||||| |
|
|
| T |
47985 |
caacccggtt |
47994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 47623 - 47734
Alignment:
| Q |
18 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
47623 |
aggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcacagaagtcatgatatcgtgtcagg |
47722 |
T |
|
| Q |
118 |
tggtacctttct |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47723 |
tggtacctttct |
47734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 164 - 334
Target Start/End: Original strand, 12325718 - 12325888
Alignment:
| Q |
164 |
gatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
263 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
12325718 |
gatatatgcactgtgatagggtgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgta |
12325817 |
T |
|
| Q |
264 |
tttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12325818 |
cttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggtt |
12325888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 12325445 - 12325553
Alignment:
| Q |
18 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325445 |
aggcaatattccgaacttcgccaaca---ccgccgaggaagataggcagcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
12325541 |
T |
|
| Q |
118 |
tggtacctttct |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12325542 |
tggtacctttct |
12325553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 125 - 334
Target Start/End: Complemental strand, 20134080 - 20133876
Alignment:
| Q |
125 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| || |
|
|
| T |
20134080 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcat |
20133989 |
T |
|
| Q |
225 |
ccttgattctattactactactac---agcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcaccta |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20133988 |
ccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcaccta |
20133889 |
T |
|
| Q |
322 |
catcaacccggtt |
334 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20133888 |
catcaacccggtt |
20133876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 20134243 - 20134132
Alignment:
| Q |
18 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20134243 |
aggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
20134144 |
T |
|
| Q |
118 |
tggtacctttct |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20134143 |
tggtacctttct |
20134132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 185 - 334
Target Start/End: Original strand, 14674569 - 14674715
Alignment:
| Q |
185 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
284 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
14674569 |
tgataattgatattttggagacaataggttggacattcatccctgatt---tcattaatactacagcaaggttgttgtacttcctaagtaattttcaggg |
14674665 |
T |
|
| Q |
285 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14674666 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt |
14674715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 31710199 - 31710337
Alignment:
| Q |
185 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
284 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
31710199 |
tgataattgatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctaagtaattttcaggg |
31710295 |
T |
|
| Q |
285 |
cctcaagattcaacaaacaaactcaatttctcacctacatca |
326 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
31710296 |
cctcaagattcaacaaacgaactcaatttctcatctccatca |
31710337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 18974406 - 18974484
Alignment:
| Q |
185 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
263 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
18974406 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
18974484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 125 - 334
Target Start/End: Original strand, 44357991 - 44358195
Alignment:
| Q |
125 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| || |
|
|
| T |
44357991 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcat |
44358082 |
T |
|
| Q |
225 |
ccttgattctattact---actactacagcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcaccta |
321 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44358083 |
ccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcaccta |
44358182 |
T |
|
| Q |
322 |
catcaacccggtt |
334 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44358183 |
catcaacccggtt |
44358195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 44357828 - 44357939
Alignment:
| Q |
18 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357828 |
aggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
44357927 |
T |
|
| Q |
118 |
tggtacctttct |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44357928 |
tggtacctttct |
44357939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 5331457 - 5331388
Alignment:
| Q |
194 |
atattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
263 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
5331457 |
atattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
5331388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 11203439 - 11203586
Alignment:
| Q |
184 |
gtgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcagg |
283 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
11203439 |
gtgataattactattctggagacaatagattggactttcatccttgatttcattact---actacagcaaaggtattgtacttcctaagtaattttcagg |
11203535 |
T |
|
| Q |
284 |
gcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt |
334 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
11203536 |
gcctcaagattcaacaaatgaactcaacttctcccctacatcaacccggtt |
11203586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 334
Target Start/End: Complemental strand, 4281689 - 4281543
Alignment:
| Q |
185 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
284 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||| ||||||||||||| |
|
|
| T |
4281689 |
tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctacgtaattttcaggg |
4281593 |
T |
|
| Q |
285 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt |
334 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||| ||||||| |
|
|
| T |
4281592 |
cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggtt |
4281543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 19807279 - 19807201
Alignment:
| Q |
185 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
263 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19807279 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
19807201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 17594762 - 17594840
Alignment:
| Q |
248 |
cagcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatca |
326 |
Q |
| |
|
|||||||| | || || ||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
17594762 |
cagcaagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatca |
17594840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 334
Target Start/End: Original strand, 8165833 - 8165976
Alignment:
| Q |
185 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
284 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || || ||||||| |||| ||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
8165833 |
tgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccac------aagggcgttgtatttcctaagtaattttcaggg |
8165926 |
T |
|
| Q |
285 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt |
334 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | || |||||||||| |
|
|
| T |
8165927 |
cctcaagattcaacgaatgaactcaatttctcatttccaacaacccggtt |
8165976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 383 - 351
Alignment:
| Q |
285 |
cctcaagattcaacaaacaaactcaatttctca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
383 |
cctcaagattcaacaaacaaactcaatttctca |
351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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