View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2029_low_7 (Length: 265)
Name: NF2029_low_7
Description: NF2029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2029_low_7 |
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| [»] scaffold0418 (1 HSPs) |
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Alignment Details
Target: scaffold0418 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 6760 - 6522
Alignment:
| Q |
19 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccattt-ccaaagccataaaattag |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6760 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccatttaccaaagccataaaattag |
6661 |
T |
|
| Q |
118 |
tttctacatccaattaattttcaatgatactgccctgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaa |
217 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6660 |
tttctacatccaattcattttcaatgatactaccctgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaa |
6561 |
T |
|
| Q |
218 |
tcacatccaaaatacttttatattggactaccttcatctc |
257 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
6560 |
tcacatccaaaatacttttatatt-gactaccttcttctc |
6522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 40495273 - 40495511
Alignment:
| Q |
19 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccattt-ccaaagccataaaattag |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40495273 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccatttaccaaagccataaaattag |
40495372 |
T |
|
| Q |
118 |
tttctacatccaattaattttcaatgatactgccctgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaa |
217 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40495373 |
tttctacatccaattcattttcaatgatactaccctgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaa |
40495472 |
T |
|
| Q |
218 |
tcacatccaaaatacttttatattggactaccttcatctc |
257 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||| |
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| T |
40495473 |
tcacatccaaaatacttttatatt-gactaccttcttctc |
40495511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 36379855 - 36380093
Alignment:
| Q |
19 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccattt-ccaaagccataaaattag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
36379855 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttgacagcaattcaatttaaaggtttcccatttaccaaagccataaaattag |
36379954 |
T |
|
| Q |
118 |
tttctacatccaattaattttcaatgatactgccctgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaa |
217 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36379955 |
tttctacatccaattcattttgaatgatactaccctgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaa |
36380054 |
T |
|
| Q |
218 |
tcacatccaaaatacttttatattggactaccttcatctc |
257 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |
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| T |
36380055 |
tcacatccaaaatacttttatatt-gactaccttcttctc |
36380093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 37988092 - 37987854
Alignment:
| Q |
19 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccattt-ccaaagccataaaattag |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37988092 |
cgatctcatgtattcaatcacagcataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccatttaccaaagccataaaattag |
37987993 |
T |
|
| Q |
118 |
tttctacatccaattaattttcaatgatactgccctgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaa |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
37987992 |
tttctacatccaattcattttcaatgatactaccctgagattattttaatttacttttcaatgttgattaaagacctaaaattctaacaaatgaaagcat |
37987893 |
T |
|
| Q |
218 |
tcacatccaaaatacttttatattggactaccttcatctc |
257 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |
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| T |
37987892 |
tcacatccaaaatacttttatatt-gactaccttcttctc |
37987854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 44699438 - 44699554
Alignment:
| Q |
64 |
gggttggcagcaattcaatttaaaggtttcccattt-ccaaagccataaaattagtttctacatccaattaattttcaatgatactgccctgagattatt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||| | |||||| ||||| |||||| |
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| T |
44699438 |
gggttggcagcaattcaatttaaaggtttcccatttaccaaaaccataacattagtttctacatccaattcattttgagcgatactatcctgaaattatt |
44699537 |
T |
|
| Q |
163 |
ttaatttacttttcaat |
179 |
Q |
| |
|
||||||||||||||||| |
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| T |
44699538 |
ttaatttacttttcaat |
44699554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 49452226 - 49452071
Alignment:
| Q |
19 |
cgatctcatgtattcaatcacaacataattcttgattttatacaagggttggcagcaattcaatttaaaggtttcccattt-ccaaagccataaaattag |
117 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |||||||||||| |
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|
| T |
49452226 |
cgatctcatgtatccaatcacaacatgattcttgattttatacaagggctggcagcaattcaatttaaaggtttcccatttacggaaaccataaaattag |
49452127 |
T |
|
| Q |
118 |
tttctacatccaattaattttcaatgatactgccctgagattattttaatttactt |
173 |
Q |
| |
|
|||||||||| |||| ||||| || |||||| || ||||||||| ||||||||||| |
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|
| T |
49452126 |
tttctacatcaaattcattttgaacgatactaccatgagattatcttaatttactt |
49452071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 49452066 - 49451968
Alignment:
| Q |
153 |
tgagattattttaatttacttttcaatgttgattaaacacctaaaattctaacaaatgaaagcaatcacatccaaaatacttttatattggactaccttc |
252 |
Q |
| |
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||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
49452066 |
tgagattatcttaatttacttttcaatactggttaaacatctaaaattctaacaaatggaagcaatcacatccaaaatacttttatatt-gactaccttc |
49451968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 31145417 - 31145457
Alignment:
| Q |
202 |
taacaaatgaaagcaatcacatccaaaatacttttatattg |
242 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
31145417 |
taacaaatggaagcaaacacatccaaaatacttttatattg |
31145457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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