View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2029_low_8 (Length: 250)
Name: NF2029_low_8
Description: NF2029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2029_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45944671 - 45944897
Alignment:
| Q |
1 |
ccaatgtacacatttatcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaattggtggaggaacatgtggttgtccactagcag |
100 |
Q |
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| T |
45944671 |
ccaatgtacacatttatcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaattggtggaggaacatgtggttgtccactagcag |
45944770 |
T |
|
| Q |
101 |
caacactttcacaaggtggaaaagttttattccttgaaagaggaggttcaccgtatacaaatccagaacagatcaacatacataactttgttaattccct |
200 |
Q |
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| T |
45944771 |
caacactttcacaaggtggaaaagttttagtccttgaaagaggaggttcaccatatacaaatccagaacagatcaacatacataactttgttaatgccct |
45944870 |
T |
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| Q |
201 |
tgctgacacaagtcctttatcattttc |
227 |
Q |
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| T |
45944871 |
ttttaatataagtccttcatcattttc |
45944897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 45937928 - 45938145
Alignment:
| Q |
10 |
acatttatcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaattggtggaggaacatgtggttgtccactagcagcaacacttt |
109 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || || ||||||||||||||||||||||| || |||||||||| |
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| T |
45937928 |
acatttatcaaagaagcaacatttgctccaccaatcttaacatatgactatatagtcatagggggaggaacatgtggttgtccacttgccgcaacacttt |
45938027 |
T |
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| Q |
110 |
cacaaggtggaaaagttttattccttgaaagaggaggttcaccgtatacaaatccagaacagatcaacatacataactttgttaattcccttgctgacac |
209 |
Q |
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| T |
45938028 |
cac------------ttttagtccttgaaagaggaggttcaccatatacaaatccagaacagatcaacatacataactttgttaattcccttgctgacac |
45938115 |
T |
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| Q |
210 |
aagtcctttatcattttcccaacaattcat |
239 |
Q |
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| T |
45938116 |
aagtccttcatcattttcccaacaattcat |
45938145 |
T |
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