View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_11 (Length: 492)
Name: NF20300_high_11
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Original strand, 38875140 - 38875603
Alignment:
| Q |
15 |
atcaaagaggctgtgagacagcagaaaagtgtcgtggagggtcaggggcgaagtagacgacgagatttattgttgttacnnnnnnnctatatgtactttg |
114 |
Q |
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| T |
38875140 |
atcaaagaggctgtgagacagaagaaaagtgtcgtggagggccaggggcgaagtagacgacgagatttattgttgttacaaaaaaactatatgtactttg |
38875239 |
T |
|
| Q |
115 |
ccatgcctaactaagattaggctcctctataatgcctaaccattcttctttgcatagtagcaagaagaatttgttggattggccaactagacttaaaatt |
214 |
Q |
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| T |
38875240 |
ccatgcctaactaagattaggctcctctataatgcctaaccattcttctttgcatagtagcaagaagaatttgttggattggctaactagacttaaaatt |
38875339 |
T |
|
| Q |
215 |
gttgttgatgctgctgggggactttcttatttgcattatgatagtgttgtttctattgttcatagggatgtaaaatctagcaaaataggaatgtaatcaa |
314 |
Q |
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| T |
38875340 |
gttgtagatgctgctgggggactttcttatttgcattatgatagtgttgttcttattgttcatagggatgtaaaatctagcaaaataggaatgtaatcaa |
38875439 |
T |
|
| Q |
315 |
atgtgtcggtgtcttgacgatgtatgtcaccaacacatgtcggacacaacttcaatgtgaagaattggtgctacatagtatatcattattaaactatata |
414 |
Q |
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| T |
38875440 |
atgtgtcggtgtcttgacgatatatgtcaccaacacatgtcggacacaacttcaatgtgaagaattgatgctacatagtatatcattattaaactatata |
38875539 |
T |
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| Q |
415 |
atatttacttatcattcttaaactatgatcatgannnnnnnnnattcacaacaagcaatagtcc |
478 |
Q |
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| T |
38875540 |
atatttacttatcattcttaaactatgatcatgatttttttttattcacaacaagcaatagtcc |
38875603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 70 - 448
Target Start/End: Original strand, 38872031 - 38872417
Alignment:
| Q |
70 |
gacgacgagatttattgttgttacnnnnnnnctatatgtactttgccatgcctaactaagattaggctcctctataatgcctaaccattcttctttgcat |
169 |
Q |
| |
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||||||||||||||||||||| || |||||| ||||||| |||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |
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| T |
38872031 |
gacgacgagatttattgttgtcacagaaaaactatatatactttgtcatgccgaactaagattaggctccgttataatgcccaaccattcttcagtgcat |
38872130 |
T |
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| Q |
170 |
agtagcaagaagaatttgttggattggccaactagacttaaaattgttgttgatgctgctgggggactttcttatttgcattatgatagtgttgtttcta |
269 |
Q |
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| T |
38872131 |
agtaacaagaagaatttgttggattgac-aactagacttaaaattgctgttgatgctgttgagggactttcttatttgcatcatgattgtgttgttccta |
38872229 |
T |
|
| Q |
270 |
ttgttcatag--------------ggatgtaaaatctagcaaaataggaatgtaatcaaatgtgtcggtgtcttgacgatgtatgtcaccaacacatgtc |
355 |
Q |
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| T |
38872230 |
ttgttcatagcctatgaatcatagggatgtagaatctagcaaaatagagatgtaatcaaatatgtcg-tgtcttgatgatgtatgtcaccaacacatgtc |
38872328 |
T |
|
| Q |
356 |
ggacacaacttcaatgtgaagaattggtgctacatagtatatcattattaaactatataatatttacttatcattcttaaactatgatcatga |
448 |
Q |
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| T |
38872329 |
ggacacaacatcaatgtgaagaaatgatgcaacatagtatatcattattaaactatataatatttactta----tcttaaactatgatcatga |
38872417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 164 - 294
Target Start/End: Original strand, 38868215 - 38868345
Alignment:
| Q |
164 |
ttgcatagtagcaagaagaatttgttggattggccaactagacttaaaattgttgttgatgctgctgggggactttcttatttgcattatgatagtgttg |
263 |
Q |
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| T |
38868215 |
ttgcatagtagcaagaagaatttgttggattggccaacaagacttaaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttg |
38868314 |
T |
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| Q |
264 |
tttctattgttcatagggatgtaaaatctag |
294 |
Q |
| |
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| T |
38868315 |
ttcctattgttcatagggatgtaaaatctag |
38868345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 38782574 - 38782527
Alignment:
| Q |
101 |
ctatatgtactttgccatgcctaactaagattaggctcctctataatg |
148 |
Q |
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| T |
38782574 |
ctatatgtactttgtcatgcctaactaagattaggctccgctataatg |
38782527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 38786238 - 38786150
Alignment:
| Q |
60 |
gggcgaagtagacgacgagatttattgttgttacnnnnnnnctatatgtactttgccatgcctaactaagattaggctcctctataatg |
148 |
Q |
| |
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|||| |||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| || ||||| |
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| T |
38786238 |
gggcaaagtagacgacgggatttattgttgttatagaaaaactatatgtactttgtcatgcctaattaagattaggctccgctgtaatg |
38786150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 38869168 - 38869219
Alignment:
| Q |
389 |
atagtatatcattattaaactatataatatttacttatcattcttaaactat |
440 |
Q |
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||||| |||||| |||||||||||| ||||||||||| |||||||||||||| |
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| T |
38869168 |
atagtctatcatcattaaactatattatatttacttaacattcttaaactat |
38869219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 38778234 - 38778189
Alignment:
| Q |
103 |
atatgtactttgccatgcctaactaagattaggctcctctataatg |
148 |
Q |
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| T |
38778234 |
atatgtacttgatcatgcctaactaagattaggctcctctataatg |
38778189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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