View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_13 (Length: 483)
Name: NF20300_high_13
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Complemental strand, 7423468 - 7423012
Alignment:
| Q |
14 |
cacagaccagctcgggatcagatcccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccag |
113 |
Q |
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| T |
7423468 |
cacaaaccagctcgggatcagatcccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccag |
7423369 |
T |
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| Q |
114 |
tatagcagttatattttctctggcccagagactaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgtgc |
213 |
Q |
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| T |
7423368 |
tatagcagttatattttctctggcccagagattaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgtgc |
7423269 |
T |
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| Q |
214 |
ttccagaattgattattattcattgtggtagttacacttggccacagaattgttagcattggtgtcaaaatattaatctgatgaaatgcnnnnnnnnnnn |
313 |
Q |
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| T |
7423268 |
ttccagaattgattattattcattgtggtagttacacttggccacggaattgttagcattggtgtcaaaattttaatctgatgaaatgcaaaaataaaaa |
7423169 |
T |
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| Q |
314 |
nttatgttcaagacttcaagtcatataagatagcaaaagaaaaatgcaaaatattaataagcatacgtc-gcttgatttaacacttcatgcgagcagaca |
412 |
Q |
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| T |
7423168 |
attatgttcaagacttcaagtcatataagatagcaaaagaaaaatgcaaaatattaataagcatacgtcagcttgatttaacacttcatgcgagcagaca |
7423069 |
T |
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| Q |
413 |
gatggttgtgattggctcttgttcgagggccataatccatgtactgtgaatattttg |
469 |
Q |
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| T |
7423068 |
gatggttgtgattggcccttgttcgagggccataatccatgtactgtgaatattttg |
7423012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 7517244 - 7517071
Alignment:
| Q |
38 |
ccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccagtatagcagttatattttctctggc |
137 |
Q |
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||||||||| ||||||||| |||||| | |||| ||||||||| ||||||| ||||| || ||| ||||||||||| || |||||||||| ||| |
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| T |
7517244 |
ccgtctttgtctttatagctccaataatcaaattttggtcataacttctcccgggcataatagtagtttgttccagtatagctgtgatattttctcaggc |
7517145 |
T |
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| Q |
138 |
ccagagactaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgt |
211 |
Q |
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| T |
7517144 |
ccaaagagtcactgcatgttgaaagtaatatagtttttggaatgtcgagcacgttctgtgttgactccactcgt |
7517071 |
T |
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