View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20300_high_14 (Length: 469)
Name: NF20300_high_14
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 39183369 - 39182902
Alignment:
| Q |
1 |
ataaaattaaaacatactccgattgttcacaaaatattattacaggatgatttgaaattctaattgcttatgtgttttcctatgcgtcgaccttggttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39183369 |
ataaaattaaaacatactccgattgttcacaaaatattattacaggatgatttgaaattctaattgcttatgtgttttcctatgcgtcgaccttggttcc |
39183270 |
T |
|
| Q |
101 |
taaaatattacatggtgatttgaaatgttgtaattattactacatggtttctgcattaacagcaatgcaaggattcatttaactcttatccttcataatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39183269 |
taaaatattacatggtgatttgaaatgttgtaattattactacatggtttctgcattaacagcaatgcaaggattcatttaattcttatccttcataatt |
39183170 |
T |
|
| Q |
201 |
gcttgatatatagtgttcagatatagtgattggtttgatttgtatt----ttctaaagaattcaccatcata----------tttttattggttttgcaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39183169 |
gcttgatatatagtgttcagatatagtgattggtttgatttgtattttctttctaaagaattcaccatcatatttttattggtttttattggttttgcaa |
39183070 |
T |
|
| Q |
287 |
cagtttgagggttcctggaaagtcaacaacccaaatttaagg-atctttgtaatgaggctgtggagctgaagagtaacttcaagtcagtcagtgtcgaac |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39183069 |
cagtttgagggttcctggaaagtcaacaacccaaatttaaggaacctttgtaatgaggctgtggagctgaagagtaacttcaagtcagtcagtgtcgaac |
39182970 |
T |
|
| Q |
386 |
atgttcctagggtatacactttgtctcatttggactattttgtttgttgacacaatgaagaaaatgtt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39182969 |
atgttcctagggtatacactttgtctcatttggactattttgtttgttgacacaatgaagaaaatgtt |
39182902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39183470 - 39183433
Alignment:
| Q |
1 |
ataaaattaaaacatactccgattgttcacaaaatatt |
38 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39183470 |
ataaaattaaaacatactctgattgttcacaaaatatt |
39183433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 254 - 453
Target Start/End: Original strand, 2102585 - 2102785
Alignment:
| Q |
254 |
gaattcaccatcatatttttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaatttaaggatctt-tgtaatgaggctgtggagc |
352 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | | || |||||||||||||||| |
|
|
| T |
2102585 |
gaatttaccatcatatttttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagc |
2102684 |
T |
|
| Q |
353 |
tgaagagtaacttcaagtcagtcagtgtcgaacatgttcctagggtatacactttgtctcatttggactattttgtttgttgacacaatgaagaaaatgt |
452 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2102685 |
tgaagagtaacttcaagtccgtccgtgttgaacatgttcctagggtatacactttgtctcatttggactattttgtttattgacacaatgaagaaaatgt |
2102784 |
T |
|
| Q |
453 |
t |
453 |
Q |
| |
|
| |
|
|
| T |
2102785 |
t |
2102785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 2088575 - 2088661
Alignment:
| Q |
272 |
ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaatttaaggatctt-tgtaatgaggctgtggagctgaag |
357 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || || |||| |||||||||||| ||| ||||| |||||| ||||||||||| |
|
|
| T |
2088575 |
ttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaag |
2088661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 2054369 - 2054455
Alignment:
| Q |
272 |
ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaatttaaggatctt-tgtaatgaggctgtggagctgaag |
357 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||||||||| ||||| ||| ||| || ||||||||| || |||||||| |
|
|
| T |
2054369 |
ttattggttttgcaacagtttctgggttcatggaaaatcaacaaccagtatttatggaacttgtgcaatgaggctttgcagctgaag |
2054455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 2062768 - 2062821
Alignment:
| Q |
272 |
ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaattta |
325 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||| |||||| |||||| |
|
|
| T |
2062768 |
ttattggttttgcaacagtttttgggttcatggaaaatcagcaacccgaattta |
2062821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University