View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20300_high_15 (Length: 452)
Name: NF20300_high_15
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_15 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 26192287 - 26192710
Alignment:
| Q |
13 |
agaatactatatttgacgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26192287 |
agaatactatatttgacgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggttt |
26192386 |
T |
|
| Q |
113 |
ccccttcgcactcttcaagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26192387 |
ccccttcgcactcttcaagtgctcctctcatggatttggcttgaggagattcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcga |
26192486 |
T |
|
| Q |
213 |
gaaaggaatggagtcggcctcnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaa |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
26192487 |
gaaaggaatggagtcggcctctttttttgagaggtatggagaaacttcttggaccggaaattggagggtcattacatttccaacgtgaagatcatcaaaa |
26192586 |
T |
|
| Q |
313 |
ctgaaatatcctgtcttgaaagcttctgtatgatccaaattaggaattgggagatcttctacggagttggtagatgggaggccttttggatcaatgacat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26192587 |
ctgaaatatcctgtcttgaaagcttctgtatgatccaagttaggaattgggagatcttctacggagttggtagatgggaggccttttggatcaatgacat |
26192686 |
T |
|
| Q |
413 |
atttgtacccagtaatgtaatttg |
436 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
26192687 |
atttgtacccagaaatgtaatttg |
26192710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 129 - 384
Target Start/End: Original strand, 26176214 - 26176469
Alignment:
| Q |
129 |
aagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcg |
228 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26176214 |
aagtgctcctctcatggatttggtttgaagagattctttagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagttg |
26176313 |
T |
|
| Q |
229 |
gcctcnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtct |
328 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
26176314 |
gcctctttttttgagaggtaaggagaaacttcttggaccggaaattggaaggtcattacatttccaacgtgaagatcatccaaactaaaatatcctgtct |
26176413 |
T |
|
| Q |
329 |
tgaaagcttctgtatgatccaaattaggaattgggagatcttctacggagttggta |
384 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
26176414 |
tgaaagcttctgtatgatccaagttaggaattgggagatcttctgcggagttggta |
26176469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 33 - 365
Target Start/End: Original strand, 26180028 - 26180361
Alignment:
| Q |
33 |
tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt |
132 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||| ||| |||||| ||||| |
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|
| T |
26180028 |
tgaaccaaagatcgtgttaacaaattcgagcatggactctagagagttggcacaagtctttgtctcccctgtaatggtttccgattcacactctccaagt |
26180127 |
T |
|
| Q |
133 |
gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcct |
232 |
Q |
| |
|
| | |||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||| | | |||||||||||| |||| |
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|
| T |
26180128 |
gaatttatcatggatttagcttgaggagaatcttcagggattgataagagttgaagaacacttggaagttgtgacattgcaagaggaatggagtcagcct |
26180227 |
T |
|
| Q |
233 |
cnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaa |
332 |
Q |
| |
|
| ||||| |||||||||| ||||||| |||||||| ||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||| |
|
|
| T |
26180228 |
ctttttttgagagaaaaggagaaaccacttggacgggaaattgaagggtcattacatttccaacataaagatcatccaaattgaaaaatcctaccttgaa |
26180327 |
T |
|
| Q |
333 |
agcttctgtatgatccaaattagga-attgggag |
365 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||| |
|
|
| T |
26180328 |
agcttctgtacgatccaagttaggagattgggag |
26180361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 33 - 350
Target Start/End: Original strand, 26162231 - 26162548
Alignment:
| Q |
33 |
tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt |
132 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| || || |||| | |||||||||||||||| ||||||| |||| |||| ||||||| |
|
|
| T |
26162231 |
tgaaccaatgatcgtgtcaacaaattcgagcatggactctagggagtttacacaagtctttgtctcccctgtaatggtttccgcttcacactgttcaagt |
26162330 |
T |
|
| Q |
133 |
gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcct |
232 |
Q |
| |
|
| |||| ||||||||| ||||||||||| ||||||||||||| || ||||||| || |||||||||||||||||| | || |||||| ||||| |||| |
|
|
| T |
26162331 |
gatcctaacatggatttagcttgaggagaatcttcagggattgagaaaagttgaaaaacacttgggagttgtgacattgcgagaggaattgagtcagcct |
26162430 |
T |
|
| Q |
233 |
cnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaa |
332 |
Q |
| |
|
| |||||| || | |||| ||||||| |||||||| ||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||| |
|
|
| T |
26162431 |
ctttttttgagaggaaacgtgaaatctcttggatgggaaattgaagggtcattacatttccaacataaagatcatccaaattgaaaaatcctaccttgaa |
26162530 |
T |
|
| Q |
333 |
agcttctgtatgatccaa |
350 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
26162531 |
agcttctgtgcgatccaa |
26162548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 26175315 - 26175435
Alignment:
| Q |
13 |
agaatactatatttgacgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggttt |
112 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26175315 |
agaatactatatttgacgtttaaactaataattgtgtcaacaaattcaagcatgggctcttaagaattggcacagatctttgtctcccctgtaacggttt |
26175414 |
T |
|
| Q |
113 |
ccccttcgcactcttcaagtg |
133 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26175415 |
ccccttcgcactcttcaagtg |
26175435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 25929249 - 25929539
Alignment:
| Q |
34 |
gaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagtg |
133 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||||| ||| ||||||||| | || | ||||||||| |||| ||| ||| || | ||||||| |
|
|
| T |
25929249 |
gaaccaattattttgtcaacaaattcaagcatggactctatagagttggcacaggtcttggactcccctgtgacgggttctgcttgacattgctcaagtg |
25929348 |
T |
|
| Q |
134 |
ctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcctc |
233 |
Q |
| |
|
| ||||||| ||||| ||||||||||| |||| |||||||||| ||||| |||| ||||||||||||||| || |||| |||||| ||||| ||||| |
|
|
| T |
25929349 |
tttctctcattgattttgcttgaggagagtcttcggggattgaaaggagttcgagaacacttgggagttgtgaaattgagagaggaattgagtcagcctc |
25929448 |
T |
|
| Q |
234 |
nnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcct |
324 |
Q |
| |
|
|| ||| || ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
25929449 |
ttttctcgaaaggaaattagaaatctcttggattggaaattggagggtcattacatttccaacatgaagatcatccaaattgaaaaatcct |
25929539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 347
Target Start/End: Complemental strand, 25648675 - 25648361
Alignment:
| Q |
33 |
tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt |
132 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||| || ||| |||| || | ||||||||| | || | || |||| || | ||||||| |
|
|
| T |
25648675 |
tgaaccaattattgtgtcaacaaatttaagcatagactctacggagttgacacacatcctggtctcccctctgactctgtcagcttcacaatgttcaagt |
25648576 |
T |
|
| Q |
133 |
gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaatggagtcggcct |
232 |
Q |
| |
|
| | |||||| ||||||||||| ||||| ||| ||||||||| ||||| || |||| |||| ||||| ||| | ||||||||||| |||| |||| |
|
|
| T |
25648575 |
gtttttctcatagatttggcttgtggagaatcttgagggattgacaagagatgtagaacccttgtgagttatgagagtgagaaaggaattgagttagcct |
25648476 |
T |
|
| Q |
233 |
cnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaa |
332 |
Q |
| |
|
| || ||| | ||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| | ||| |||||| |
|
|
| T |
25648475 |
cctttttcgaaaggaattgaggaactttttggaccggaaattggagggccattacatttccaacatgaagatcatccaaaccgaaaaagcctaacttgaa |
25648376 |
T |
|
| Q |
333 |
agcttctgtatgatc |
347 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
25648375 |
agcttctgtgtgatc |
25648361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 318
Target Start/End: Complemental strand, 32189434 - 32189237
Alignment:
| Q |
121 |
cactcttcaagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgtgacatcgagaaaggaa |
220 |
Q |
| |
|
|||| |||||||| | |||||| |||||||||| ||||| ||| ||||||||| ||||| || |||| |||| ||||||||| | |||| ||| | |
|
|
| T |
32189434 |
cactgttcaagtgtttttctcatatatttggcttgtggagaatcttgagggattgacaagagatgtagaactcttgtgagttgtgagagtgagagaggca |
32189335 |
T |
|
| Q |
221 |
tggagtcggcctcnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaa |
318 |
Q |
| |
|
| ||||||||||| || ||| || ||| || || ||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
32189334 |
ttgagtcggcctccttttttgaaaggaaatgaggaattttttgaaccggaaattggagggtcattacatttccaacacgaagatcattcaaattgaaa |
32189237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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