View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_16 (Length: 448)
Name: NF20300_high_16
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 3576057 - 3576493
Alignment:
| Q |
1 |
tcaacacattcaatgactcaagaacaatatggccagcaacaaagtatgcaaatgctttatggtggtagcaatgatttacaagcagtagtggagcaatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576057 |
tcaacacattcaatgactcaagaacaatatggccagcaacaaagtatgcaaatgctttatggtggtagcaatgatttacaagcagtagtggagcaatcaa |
3576156 |
T |
|
| Q |
101 |
atgaatggaaagcactagacaaatttgttgcttctcgtctaagtcaagatcaagatcatgcttctaagggaactagtagttattgtaatgtggctcaaca |
200 |
Q |
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| T |
3576157 |
atgaatggaaagcactagacaaatttgttgcttctcgtctaagtcaagatcaagatcatgcttctaagggaactagtagttattgtaatgtggctcaaca |
3576256 |
T |
|
| Q |
201 |
aattgctttgctatcaaatgatgaatccaaaaaatcagaaactggtggccaggaacatgtgacttcaatctccaactcaaattgtcagattgacacgtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576257 |
aattgctttgctatcaaatgatgaatccaaaaaatcagaaactggtggccaggaacatgtgacttcaatctccaactcaaattgtcagattgacacgtgg |
3576356 |
T |
|
| Q |
301 |
aaatgaaaatttgtaactatatatgaagatgcatattaatattatatattatagggagtagtacagtttaactcctacaaaaattaaaagggtttatgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576357 |
aaatgaaaatttgtaactatatatgaagatgcatattaatattatatattatagggagtagtacagtttaactcctacaaaaattaaaagggtttatgta |
3576456 |
T |
|
| Q |
401 |
catagtaaacccttataaagcattgttaaatattctt |
437 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3576457 |
catagtaaacccttataaagcattgttaaatattctt |
3576493 |
T |
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