View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_19 (Length: 421)
Name: NF20300_high_19
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 49669616 - 49670006
Alignment:
| Q |
16 |
ttcttcctcgtaaatttgggatggctccattaaattttttctgcttcctcatgtattgtcccctcgtgttgattttatcagcaaggtatggaagtgggga |
115 |
Q |
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| T |
49669616 |
ttcttcctcgtaaatttgagatggctccattagattttttctgcttcctcttgtattgtctccttgtgttgattttatcagcaaggtatggaaatgggaa |
49669715 |
T |
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| Q |
116 |
ccaatataactgtccacactcattcagttgtggagctcgtgggattttccgttatcctttcaccaaggcagaacaaccagactgtggctccatactcata |
215 |
Q |
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| T |
49669716 |
ccaatataactgtccacactcattcagttgtggagctcgtgggattttccattaccctttcaccaaggcagaacaaccagactgtggctccatactcata |
49669815 |
T |
|
| Q |
216 |
catggctgtgacgacacctattattcacccaaaatgattcaactggagaagaatgcnnnnnnnnttgagctaactggtgtcattgaccacaataccatta |
315 |
Q |
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| T |
49669816 |
cgtggctgtgatgacagttattattcacccaaaatgatccaactggacaagaatgcaaaaccaattgagctaactggtgtcgttgaccagagtaccatta |
49669915 |
T |
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| Q |
316 |
cactttctgatcaagaattttacaaacgtttgcaagataatgtttgtaatactttgaaccaaaattacactcttccttctccttctccttt |
406 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
49669916 |
cactttctgatcaagatttttacaaacgtttgcaagataatgcttgtgatactttgaaccacaattacactcttcctcccccttctccttt |
49670006 |
T |
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