View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_high_2 (Length: 675)

Name: NF20300_high_2
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_high_2
NF20300_high_2
[»] chr1 (1 HSPs)
chr1 (45-675)||(12454562-12455196)


Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 45 - 675
Target Start/End: Original strand, 12454562 - 12455196
Alignment:
Q  45 atttaatatgtttttggaaagtttgaagaatagtatattcacatgtagcctcaataagaaatttgtttgaattgatattgtaattagagagtttcttttc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12454562 atttaatatgtttttggaaagtttgaagaatagtatattcacatgtagcctcaataagaaatttgtttgaattgatattgtaattagagagtttcttttc 12454661  T
Q  145 ccacctggttcggattatattatccgaaatgttctagggcgcacgacaagnnnnnnnn--tcccttgttgtaattattatgaagctgctgagttttatat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||          || |||||||||||||||||||||||||||||||||||||    
T  12454662 ccacctggttcggattatattatccgaaatgttctagggcgcatgacaagaaaaaaaaaatctcttgttgtaattattatgaagctgctgagttttatat 12454761  T
Q  243 ttgtatctatgttgaaaattacaaatagtactgaaaattgagatgtaatttgtattaagtgtatcattcaatgattgtttagggaacaatagttaaatga 342  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12454762 ttgtatctatgttgaaaattacaaatagtactgaaaattgaaaggtgatttgtattaagtgtatcattcaatgattgtttagggaacaatagttaaatga 12454861  T
Q  343 aaagatgtactagttcatgaaaaaacaccttcaatcatgtaagaacacatcatattaatttgaatctcaaattcatgaagacaccttttgaagtgttttc 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12454862 aaagatgtactagttcatgaaaaaacaccttcaatcatgtaagaacacatcatattaatttgaatctcaaattcatgaagacaccttttgaagtgttttc 12454961  T
Q  443 tttgatttcatttattttgtaaatttctcaaaatggaacatac--atgatcagtagtgattgataacacttgattttgagatcagtatttcctctaattg 540  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12454962 tttgatttcatttattttgtaaatttctcaaaatggaacatacatatgaccagtagtgattgataacacttgattttgagttcagtatttcctctaattg 12455061  T
Q  541 aaatagaccagttttaagggtatttctaaattaaacaagatctggagctagcatgcttcttacattagggtgtacatgtgcatgaggctcagggattctg 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12455062 aaatagaccagttttaagggtatttctaaattaaacaagatctggagctagcatgcttcttacattagggtgtacatgtgcatgaggctcagggattctg 12455161  T
Q  641 gtgagggtaggtgcacagagccttagtttccaagc 675  Q
    |||||||||||||||||||||||||||||||||||    
T  12455162 gtgagggtaggtgcacagagccttagtttccaagc 12455196  T

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