View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_20 (Length: 418)
Name: NF20300_high_20
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 208 - 378
Target Start/End: Complemental strand, 16577907 - 16577741
Alignment:
| Q |
208 |
ttcaatgactcggggggaatcaagtaaaggagtgtttgtgtgtatgatatgaaagtgagaatgattaattatttattaattaagtaaaagagatggtttc |
307 |
Q |
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| T |
16577907 |
ttcaatgactcggggggaatcaagtaaaggagtgtttgtgtgtatgatatgaaagtgaga----ttaattatttattaattaagtaaaagagatggtttc |
16577812 |
T |
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| Q |
308 |
atcataagatgcaaaaggactactagctagtagtgatggttgatcacacgattattaggaagtgttctctt |
378 |
Q |
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| T |
16577811 |
atcataagatgcaaaaggactactagctagtagtgatggttgatcacacgattattaggaagtgttctctt |
16577741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 16578098 - 16577974
Alignment:
| Q |
17 |
aaaccttaacaactcatgatataagaaaaacaagggtttgttcttgtgtctatctattccctaaaaacaaattatatgaaatacatagatgctctttcac |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16578098 |
aaaccttaacaactcatgatattagaaaaacaagggtttgttcttgtgtctatcaattccctaaaaacaaattatatgaaatacatagatgctctttcac |
16577999 |
T |
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| Q |
117 |
tagctaatagctatacagataaatt |
141 |
Q |
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| T |
16577998 |
tagctaatagttatacagataaatt |
16577974 |
T |
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