View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_high_22 (Length: 416)

Name: NF20300_high_22
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_high_22
NF20300_high_22
[»] chr4 (3 HSPs)
chr4 (98-235)||(2464463-2464601)
chr4 (92-219)||(6736510-6736629)
chr4 (33-76)||(2464618-2464660)
[»] chr2 (3 HSPs)
chr2 (10-200)||(28173413-28173596)
chr2 (92-234)||(11951637-11951782)
chr2 (92-235)||(2743968-2744109)
[»] scaffold0312 (1 HSPs)
scaffold0312 (92-234)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (92-234)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (98-231)||(45227735-45227870)
chr3 (94-235)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (150-235)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (92-235)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 2464601 - 2464463
Alignment:
Q  98 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttt 196  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  2464601 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggacataatggatgagtgaagttttcaccggtctttatccaaaccatttt 2464502  T
Q  197 taaactaaaaatttcatcctttgtaaactcattcatgct 235  Q
    | ||||||||||||||||||||| |||||||||||||||    
T  2464501 ttaactaaaaatttcatcctttgaaaactcattcatgct 2464463  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 6736510 - 6736629
Alignment:
Q  92 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 190  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||   |||||         ||||||||| ||||||    
T  6736510 tgaaaccaaagaaatggtgagtcacaagaattcaacgggagcatgacaaacaaagtagaaataatgggtaagtga---------cggtctttacccaaac 6736600  T
Q  191 aatttttaaactaaaaatttcatcctttg 219  Q
    |||||||||||||||| ||||||||||||    
T  6736601 aatttttaaactaaaagtttcatcctttg 6736629  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 2464660 - 2464618
Alignment:
Q  33 aagaagaaaactccaagagatttaatcctttgcaaactgtgaat 76  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  2464660 aagatgaaaactccaagagatt-aatcctttgcaaactgtgaat 2464618  T

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Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 28173596 - 28173413
Alignment:
Q  10 tagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcctttgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggt 109  Q
    ||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||| ||| |||             ||||||||||||||||||    
T  28173596 tagcataggtgtttttcctagacaagaa---aactccaagagatttaatcctttgcaaactctgactctaaaaaaaa-----tgaaatcaaagaaatggt 28173505  T
Q  110 gagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaa 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  28173504 gagtcacaagaattcaatggggtcataacaaacaaagtggacataatggacaagtgaagttttcaccggtctttatccaaacaatttttaaa 28173413  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 11951782 - 11951637
Alignment:
Q  92 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacat--aatggacgagtgaagttttcaccggtcttta-ccaa 188  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||| ||  | ||||  ||||||||||||||| ||||    
T  11951782 tgaaaccaaagaaatggtgagtcacaataattcaatgggagcatgacaaacaaagtggacatttaatagataaatgaaaatttcaccggtctttatccaa 11951683  T
Q  189 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 234  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11951682 acaatttttaaactaaaaatttcatcctttggaaactcattcatgc 11951637  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 235
Target Start/End: Complemental strand, 2744109 - 2743968
Alignment:
Q  92 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 188  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  2744109 tgaaaccaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 2744015  T
Q  189 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 235  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||    
T  2744014 acaatttttaaactaaaagtttcatcatttgaaaactcattcatgct 2743968  T

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Target: scaffold0312 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 19133 - 18990
Alignment:
Q  92 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 190  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  19133 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 19034  T
Q  191 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 234  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  19033 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 18990  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 92 - 234
Target Start/End: Original strand, 411437 - 411580
Alignment:
Q  92 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 190  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  411437 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 411536  T
Q  191 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 234  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  411537 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 411580  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 45227870 - 45227735
Alignment:
Q  98 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtgg-acataatggacgagtgaagttttcaccggtcttta-ccaaacaattt 195  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||   ||||||  ||||||||||||||| |||||||||||    
T  45227870 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggaaaataatgggtaagtgaaaatttcaccggtctttacccaaacaattt 45227771  T
Q  196 ttaaactaaaaatttcatcctttgtaaactcattca 231  Q
    ||||||||| |||||||||||| | || ||||||||    
T  45227770 ttaaactaacaatttcatccttcgaaagctcattca 45227735  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 29896665 - 29896808
Alignment:
Q  94 aaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtctttaccaaacaa- 192  Q
    |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||| | ||| |     
T  29896665 aaatcaaagaaatgatgaatcacaagaattcaatgggagcatgacaaaccaagtggacataatggatgagtgatgttttcaccggtctttatccaaccat 29896764  T
Q  193 --tttttaaactaaaaatttcatcctttgtaaactcattcatgct 235  Q
      ||||||||||||||| ||||||||||  || ||||||||||||    
T  29896765 tttttttaaactaaaaa-ttcatccttttaaagctcattcatgct 29896808  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 26300141 - 26300227
Alignment:
Q  150 acataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 235  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26300141 acataatggatgagtgaagttttcatcggtcattatccaaacaatttttaaactaaaaatttcatcctttgaaaactcattcatgct 26300227  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 235
Target Start/End: Complemental strand, 29935224 - 29935083
Alignment:
Q  92 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 188  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  29935224 tgaaaccaaagaaatggtaagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 29935130  T
Q  189 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 235  Q
    |||||||||||||||||| ||||||| |||| || ||||||||||||    
T  29935129 acaatttttaaactaaaagtttcatcatttgaaagctcattcatgct 29935083  T

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