View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_25 (Length: 370)
Name: NF20300_high_25
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 24537504 - 24537856
Alignment:
| Q |
7 |
aaaatacattctattttggcttcctagattaaccacaatacctcatgccaaaaacagttgagttttttatgatctcaagtaaagcaaaatgagttcgaca |
106 |
Q |
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| T |
24537504 |
aaaatacattctattttgtcttcctagattaaccacaatacctcatgccaaaaacagttgagttttttatgatctcaagtaaagcaaaatgagttcgaca |
24537603 |
T |
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| Q |
107 |
cggttttccaataccaaagaaaaacagttgagttttccaaaaacagctgaagtttggtacaaatgataagcatttcattccttcaatttctttcatcatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24537604 |
cggttttccaataccaaagaaaaacagttgagttttccaaaaacagctgaagtttggtacaaatgataagcatttcattccttcaatttctttcatcatt |
24537703 |
T |
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| Q |
207 |
taacttctaaaaatataaacatctccatgttactgttgtgttaataattgaatcatatgcatgtttaaacttaaacctaaagttcttgaagagtttactc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24537704 |
taacttctaaaaatataaacatctccatgttactgttgtattaataattgaatcatatgcatgtttaaacttaaacctaaagttcttgaagagtttactc |
24537803 |
T |
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| Q |
307 |
acaactttgtcagctatatatgatgtctcattctccacaacttaaggaagtat |
359 |
Q |
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| T |
24537804 |
acaactttgtcagctatatatgatgtctcattctccacaacttaaggaagtat |
24537856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 23683573 - 23683487
Alignment:
| Q |
224 |
aacatctccatgttactgttgtgttaataattgaatcatatgcatgtttaaacttaaacctaaagttcttgaagagtttactcacaactttgtca |
318 |
Q |
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| T |
23683573 |
aacatccccatgttaccgttga-ttaataattgaatcatatgcatgtt-------aaacctaatgttcttgaagagtttactcacaactttgtca |
23683487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 24055810 - 24055724
Alignment:
| Q |
224 |
aacatctccatgttactgttgtgttaataattgaatcatatgcatgtttaaacttaaacctaaagttcttgaagagtttactcacaactttgtca |
318 |
Q |
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|||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
24055810 |
aacatccccatgttaccgttga-ttaataattgaatcatatgcatgtt-------aaacctaatgttcttgaagagtttactcacaactttgtca |
24055724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 34038101 - 34038139
Alignment:
| Q |
282 |
cctaaagttcttgaagagtttactcacaactttgtcagc |
320 |
Q |
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| T |
34038101 |
cctaaagttattgaagagtttactcacagctttgtcagc |
34038139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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