View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20300_high_30 (Length: 307)
Name: NF20300_high_30
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 33465366 - 33465654
Alignment:
| Q |
1 |
acgagtgatatcaaagattctattataaaatcggttctcttccaagtcaaaaaatcatatttaaaattttcatggtgcatgatatgcttcttttctatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
33465366 |
acgagtgatatcaaagattctattataaaatcggttctcttccaagtcaaaaaatcatatttaaaactttcattgtgcatgatatgcttctcttctatgt |
33465465 |
T |
|
| Q |
101 |
gccacaatccacaagaagcaatgctacaattatattaagaaaaggtacattgaatcctcaatctcaaaacttgtccaataataaaactgtaaaccattac |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33465466 |
gccacaatccacaacaagcaatgctacaattatattaagaaaaggtacattgaatcctcaatctcaaaacttgtccaataataaaactgtaaaccatttc |
33465565 |
T |
|
| Q |
201 |
aacatttttcaatccagtccatttattcgaagatcaaagcaaaaacaaaaagaacaaggtccaacccaaagtgtagaataataagcatg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33465566 |
aacatttttcaatccagtccatttattcgacgatcaaagcaaaaacaaaaagaataaggtccaacccaaagtgtagaataataagcatg |
33465654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 34609472 - 34609188
Alignment:
| Q |
8 |
atatcaaagattctattataaaatcggttctcttccaagtcaaaaaatcatatttaaaattttcatggtgcatgatatgcttcttttctatgtgccacaa |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
34609472 |
atatcaaa-attctattataaaatcggttctcttccaagtcaaa---ttatatttaaaactttcatggtgcatgatacgcttctccccaatgtgccacaa |
34609377 |
T |
|
| Q |
108 |
tccacaagaagcaatgctacaattata--ttaagaaaaggtacattgaatcctcaat-----ctcaaaacttgtccaataataaaactgtaaaccattac |
200 |
Q |
| |
|
||||||| |||||||||||||| || | ||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34609376 |
tccacaacaagcaatgctacaactacaggttaggaaaaggtacattgaatcctctatactatctcaaaacttgtccaataataaaactgtaaaccattgc |
34609277 |
T |
|
| Q |
201 |
aacatttttcaatccagtccatttattcgaagatcaaagcaaaaacaaaaagaacaaggtccaacccaaagtgtagaataataagcatg |
289 |
Q |
| |
|
||||||||||||||| | |||||||| | | ||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34609276 |
aacatttttcaatcctattcatttatttgcaaatcaaaggaaaaacaaataaaacaaggtacaacccaaagtgtagaataataagcatg |
34609188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 34606378 - 34606105
Alignment:
| Q |
8 |
atatcaaagattctattataaaatcggttctcttccaagtcaaaaaatcatatttaaaattttcatggtgcatgatatgcttcttttctatgtgccacaa |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34606378 |
atatcaaa-attctattataaaatcggttctcttccaagtcaaaa---catattcaaaactttcatggtgcatgatatgcttctcctcaatgtgccacaa |
34606283 |
T |
|
| Q |
108 |
tccacaagaagcaatgctacaattata--ttaagaaaaggtacattgaatcct-----caatctcaaaacttgtccaataataaaactgtaaaccattac |
200 |
Q |
| |
|
||||| | ||| |||||||||| || | ||| ||||| ||||||| |||||| | |||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34606282 |
tccacgacaagaaatgctacaactacaagttaggaaaaagtacattaaatcctctatactatctcaaaacttgtccaataataacaccgtaaaccatta- |
34606184 |
T |
|
| Q |
201 |
aacatttttcaatccagtccatttattcgaagatcaaagcaaaaacaaaaagaacaaggtccaacccaaagtgtagaataataagcatg |
289 |
Q |
| |
|
|||| ||||||||||| | | |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34606183 |
----------aatcatgtccatttatttgcaaatcaaaagaaaaacaaatagaacaaggtccaacccaaagtgtagggtaataagcatg |
34606105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 289
Target Start/End: Complemental strand, 34727587 - 34727382
Alignment:
| Q |
80 |
tgatatgcttcttttctatgtgccacaatccacaagaagcaatgctacaattatat--taagaaaaggtacattgaatcctcaat-----ctcaaaactt |
172 |
Q |
| |
|
|||||||||||| || |||||||||||||||| | ||| |||||||||| || | || ||||| ||||||| ||||||| || |||||||||| |
|
|
| T |
34727587 |
tgatatgcttctcctcaatgtgccacaatccacgacaagaaatgctacaactacaagctaggaaaaagtacattaaatcctctatactatctcaaaactt |
34727488 |
T |
|
| Q |
173 |
gtccaataataaaactgtaaaccattacaacatttttcaatccagtccatttattcgaagatcaaagcaaaaacaaaaagaacaaggtccaacccaaagt |
272 |
Q |
| |
|
|||||||||||| || ||||||||||| | ||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
34727487 |
gtccaataataacaccgtaaaccattaaatcat-----------gtccatttattcgaaaatcaaaagaaaaacaaatagaacaaggtccaacccaaagt |
34727399 |
T |
|
| Q |
273 |
gtagaataataagcatg |
289 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
34727398 |
gtagggtaataagcatg |
34727382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 34612551 - 34612509
Alignment:
| Q |
8 |
atatcaaagattctattataaaatcggttctcttccaagtcaaa |
51 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34612551 |
atatcaaa-attctattataaaatcggttctcttccaagtcaaa |
34612509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 38866263 - 38866316
Alignment:
| Q |
161 |
atctcaaaacttgtccaataataaaactgtaaaccattacaacatttttcaatc |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| |||| ||||||||||| |
|
|
| T |
38866263 |
atctcaaaacttgtccaatattaaaactacaaaccatgacaagatttttcaatc |
38866316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University