View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_33 (Length: 299)
Name: NF20300_high_33
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 39183598 - 39183883
Alignment:
| Q |
1 |
atatccttggttgctagcttctttcagccccaaaattagaccattatattcagcggaattatttgtctcaatgccgagtccttggctgactccatggacc |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||| ||||||||| |
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| T |
39183598 |
atatccttggttcctagcttcattcagccccaaaattagaccattatattcagcagaattatttgtttgagtgccgagtccttggctgacgccatggacc |
39183697 |
T |
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| Q |
101 |
tataaagagacataaagtgttggctacatttgat------atattgtataatgcaaaaatgatttgatggatagagtattcacccgactcccatctgcag |
194 |
Q |
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| T |
39183698 |
tataaagagaca--aagtgttaggtacatttgactttgacatattgtatagtgcaaaaatgatttgatggatagagtattcacccgactcccatctgcag |
39183795 |
T |
|
| Q |
195 |
aacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattctaggatacaagaatgctgcaagatttt |
282 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39183796 |
aacgcagaacagctcctgcaccagaccttccaggatttccactggatgctccatcaaattctaggatacaagaacgctgcaagatttt |
39183883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2102433 - 2102304
Alignment:
| Q |
1 |
atatccttggttgctagcttctttcagccccaaaattagaccattatattcagcggaattatttgtctcaatgccgagtccttggctgactccatggacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
2102433 |
atatccttggttgctagcttctttcagccccaaaattagaccattatattcagcggaattatttgtttgaatgccgagtccttggctgacgccatggacc |
2102334 |
T |
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| Q |
101 |
tataaagagacataaagtgttggctacatt |
130 |
Q |
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| T |
2102333 |
tataaagagacataaagtgttagctacatt |
2102304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 2102306 - 2102193
Alignment:
| Q |
172 |
attcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattctaggatacaagaatgc |
271 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || |
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| T |
2102306 |
attcacccgactcccatctgcagaacgaagaacagctccagcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
2102207 |
T |
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| Q |
272 |
tgcaagattttgtt |
285 |
Q |
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|||||||||||||| |
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| T |
2102206 |
tgcaagattttgtt |
2102193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 2106297 - 2106201
Alignment:
| Q |
180 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattctaggatacaagaatgctgcaa |
276 |
Q |
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| T |
2106297 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccactggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2106201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 2097810 - 2097714
Alignment:
| Q |
180 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattctaggatacaagaatgctgcaa |
276 |
Q |
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| T |
2097810 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccgctggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2097714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 4952107 - 4952165
Alignment:
| Q |
72 |
tgccgagtccttggctgactccatggacctataaagagacataaagtgttggctacatt |
130 |
Q |
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| T |
4952107 |
tgccgagtccttggctgatgccatggacctataaagagatataaagagttagctacatt |
4952165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 4952169 - 4952208
Alignment:
| Q |
246 |
catcaaattctaggatacaagaatgctgcaagattttgtt |
285 |
Q |
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|||||||||| |||||||||||| |||||||||||||||| |
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| T |
4952169 |
catcaaattcaaggatacaagaacgctgcaagattttgtt |
4952208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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