View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_34 (Length: 294)
Name: NF20300_high_34
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 9334622 - 9334893
Alignment:
| Q |
7 |
gtatatgatttatgcacaatgaagaaaacttcaaaatagatgtaataaaggatgaactatcaaaacctaatcaaagtaaacgacaaacaaagaggacaga |
106 |
Q |
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| T |
9334622 |
gtatatgatttatgcacaatgaagaaaacttcaaaatagatgtaataaaggatgaactatcaaaacctaatcaaagtaaacgacaaacaaagaggacaga |
9334721 |
T |
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| Q |
107 |
taagtcatagataagttactcagaactgcacttttcacactgtcctttctaataaggaaaacaaaaaacaagagtttgctatcatagttaaatatatcat |
206 |
Q |
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| T |
9334722 |
taagtcatagataagttactcagaactgcacttttcacaatgtcctttctaataaggaaaacaaaaaacaaaagtttgctatcatagttacatatatcat |
9334821 |
T |
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| Q |
207 |
gccctcgaaaacaaactatagagaacctagcattccaaacattgatattattagacaatagatgggctaatt |
278 |
Q |
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| T |
9334822 |
gccctcgaaaacaaactatacagaaactagcattccaaacattgatattattagacaatagatgggctaatt |
9334893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 9329200 - 9329241
Alignment:
| Q |
6 |
agtatatgatttatgcacaatgaagaaaacttcaaaatagat |
47 |
Q |
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| T |
9329200 |
agtatatgatttatgcacaatgaagaaaacttcaaaatagat |
9329241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 9394298 - 9394393
Alignment:
| Q |
50 |
aataaaggatgaactatcaaaacctaatcaaagtaaacgacaaacaaagaggacagat-aagtcatagataagttactcagaactgcacttttcaca |
145 |
Q |
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| T |
9394298 |
aataaaggatgaagtttcaaaaccgaatcttagtaaacaagaaacaaagaagacagatcaaaccataga-aagttactcagaacagcatttttcaca |
9394393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 38413865 - 38413941
Alignment:
| Q |
61 |
aactatcaaaacctaatcaaagtaaacgacaaacaaagaggacag-ataagtcatagataagttactcagaactgca |
136 |
Q |
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| T |
38413865 |
aactatcaaaactcaatctaagtaaacaagaaacaaagaggacggaatcggtcatagataagttattcaaaactgca |
38413941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 4432913 - 4432989
Alignment:
| Q |
122 |
ttactcagaactgcacttttcacactgtcctttctaataaggaaaacaa-aaaacaagagtttgctatcatagttaa |
197 |
Q |
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| T |
4432913 |
ttactcagaacggcatttttcacaatgtcagttctaataaagcaaacaagaaaccaagagtttgcattcatagttaa |
4432989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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