View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_36 (Length: 291)
Name: NF20300_high_36
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_36 |
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| [»] scaffold0874 (1 HSPs) |
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Alignment Details
Target: scaffold0874 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0874
Description:
Target: scaffold0874; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 187 - 1
Alignment:
| Q |
19 |
gtgcttcctcattctagcatcaatatttgatccattcctcccagaattcaaagaagaaaaaggatcttcattatctggccgatcaacatcccctaatgaa |
118 |
Q |
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| T |
187 |
gtgcttcctcattctagcatcaatatttgatccattcctcccagaattcaaagaagaataaggatcttcattatctggccgatcaacatcccctaatgaa |
88 |
T |
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| Q |
119 |
tacctactcccgttctttctcaatctaccacgaacattcaactcggtcttcctagtattcaaatgagaagaacgctccccatcatgg |
205 |
Q |
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| T |
87 |
tacctactcccgttctttctcaatccaccacgaacattcaactcggtcttcctagtactcaaatgagaagaacgctccccatcatgg |
1 |
T |
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