View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_37 (Length: 276)
Name: NF20300_high_37
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 48107608 - 48107354
Alignment:
| Q |
1 |
tatacactttttcaggtaactaacttatgtttctctctcagtcactaacattcatcaaatgaatgtaaattatcatattgatcgttaattcatttgtttt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107608 |
tatatactttttcaggtaactaacttatgtttctc----agtcactaacattcatcaaatgaatgtaaattatcatattgatcgttaattcatttgtttt |
48107513 |
T |
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| Q |
101 |
ataaaacatattttgattgattttatttccacattcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107512 |
ataaaacatattttgattgattttatttccacattcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagt |
48107413 |
T |
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| Q |
201 |
gatcaactggtgcatggtggccatgtgatagcaaagcatggatgttggtctcttctaaa |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107412 |
gatcaactggtgcatggtggccatgtgatagcaaagcatggatgttggtctcttctaaa |
48107354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 48068498 - 48068375
Alignment:
| Q |
133 |
attcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagtgatcaactggtgcatggtggccatgtgatagc |
232 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| | ||||||||||||||||| |
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| T |
48068498 |
attcagcttggttccagctgagtgaaggaagtgacacaatttctgtggtatttaaaataaatggaagtg---aattggtaaaaggtggccatgtgatagc |
48068402 |
T |
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| Q |
233 |
aaagcatggatgttggtctcttctaaa |
259 |
Q |
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||| |||||||||||||||||||||| |
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| T |
48068401 |
aaaatatggatgttggtctcttctaaa |
48068375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 48063834 - 48063711
Alignment:
| Q |
133 |
attcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagtgatcaactggtgcatggtggccatgtgatagc |
232 |
Q |
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||||||||||| ||||||| |||||||||||||||| | || || |||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
48063834 |
attcagcttggtttcagctcagtgaaggaagtgacattgtgtcagttgtatttaaaagaaatggaagtga---actggtgcatggtggccatgtgatagc |
48063738 |
T |
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| Q |
233 |
aaagcatggatgttggtctcttctaaa |
259 |
Q |
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|| |||||||||||||| || ||||| |
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| T |
48063737 |
caaacatggatgttggtcgctgctaaa |
48063711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 48101084 - 48100954
Alignment:
| Q |
126 |
tttccacattcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagtgatcaactggtgcatggtggccatg |
225 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||| | || || |||||||||| |||||||||||| | | || | ||||| |||| |
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| T |
48101084 |
tttccacattcagcttggtttcagttgagtgaaggaagtgagtttgtatcagttgtatttaaaataaatggaagtga---atttgtacgaggtggtcatg |
48100988 |
T |
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| Q |
226 |
tgatagcaaagcatggatgttggtctcttctaaa |
259 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
48100987 |
tgatagcaaagcatggatgctggtctcttctaaa |
48100954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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