View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_4 (Length: 612)
Name: NF20300_high_4
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 595
Target Start/End: Original strand, 27642591 - 27643189
Alignment:
| Q |
10 |
attatacttgtcagcagctttcataacctgaacagatgtatcaaacgtgaaaaaggtattggttcaacaagctaaagtaacattaactaacctggggata |
109 |
Q |
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| T |
27642591 |
attataatcgtcagaagctttcataacctgaacagatgtatcaaacgtgaaaaaggtattggttcaacaagctaaagtaacattaactaacctggggata |
27642690 |
T |
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| Q |
110 |
agaaattggatatctcagtgttactttagtgagttagtccataagttgagtgcgttacttttgtccattctctgttattgcaaaaattgattcagatgca |
209 |
Q |
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| T |
27642691 |
agaaattggatatctcagtgttactttagtgagttagtccataagttgagtgcgttacttttgtccattctctgttattgcaaaaattgattcagatgca |
27642790 |
T |
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| Q |
210 |
cagnnnnnnnncatctactgtgtcccaagagggaagggttgcttttagtggaggaggtagtgtagagtccaaaatagaaaaaa-gtacactggcaaacga |
308 |
Q |
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| T |
27642791 |
cagaaaaaaa-catctactgtgtcccaagagggaagg-ttgcttttagtggaggaggtagtgtagagtccaaaatagaaaaaaagtacactggcaaagga |
27642888 |
T |
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| Q |
309 |
atcagttaagactgaggggaacaaacagtttgatgagattagtctgaacgggttgcgtgcagatgataccggtt--------------aaatgactctta |
394 |
Q |
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| T |
27642889 |
atcagttaagactgaggggaacaaacagtttgatgagattagtctctatgggttgcgtgcagatgataccggtttatagaaagaaaaaaaatgactctta |
27642988 |
T |
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| Q |
395 |
ttaaaccttttgtgatatatgaaataaaagtcatacaatattattatagaaagaaaggtataaaaacaacaatgcaattcaatgtttgtagacgggtatg |
494 |
Q |
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| T |
27642989 |
ttaaaccttttgtgatatatgaaataaaagtcatacaatattattatagaaagaaaggtataaaaacaacaatgcaattcaatgtttgtagacgggtatg |
27643088 |
T |
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| Q |
495 |
agtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccataatccttactcttgttcatactagata |
594 |
Q |
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| T |
27643089 |
agtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccataatccttacttttgttcatactagata |
27643188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 454 - 595
Target Start/End: Complemental strand, 50247842 - 50247702
Alignment:
| Q |
454 |
ataaaaacaacaatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcata |
553 |
Q |
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| T |
50247842 |
ataaaaacgataatgcaatt-attgttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcata |
50247744 |
T |
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| Q |
554 |
ctcaaagaacccataatccttactcttgttcatactagatac |
595 |
Q |
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| T |
50247743 |
ctctaaaaacccataatctttactcttgttcatactagatac |
50247702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 454 - 595
Target Start/End: Complemental strand, 50254980 - 50254839
Alignment:
| Q |
454 |
ataaaaacaacaatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcata |
553 |
Q |
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| T |
50254980 |
ataaaaacaacaatgtagttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcata |
50254881 |
T |
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| Q |
554 |
ctcaaagaacccataatccttactcttgttcatactagatac |
595 |
Q |
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| T |
50254880 |
ctcaaaaaactcataatttttactcttattcatactagatac |
50254839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 27646048 - 27646138
Alignment:
| Q |
246 |
ggttgcttttagtggaggaggtagtgtagagtccaaaatagaaaaaagtacactggcaaacgaatcagttaagactgaggggaacaaacag |
336 |
Q |
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| T |
27646048 |
ggttgcttttagtggaggaggtagtgtagaatccaaaatagaaaaaagtacactagcaaaggaatacgttgggactgaggggaacatacag |
27646138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 465 - 528
Target Start/End: Original strand, 27646265 - 27646328
Alignment:
| Q |
465 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatc |
528 |
Q |
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| T |
27646265 |
aatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaatc |
27646328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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