View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_41 (Length: 244)
Name: NF20300_high_41
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_41 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 76829 - 76626
Alignment:
| Q |
24 |
gaagacaaatcccccatcttcagcctgatttcatttttgcagacttcctatcgtcgtagttcaatatcctccacacaagcagataattgaagatcctccg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76829 |
gaagacaaatcccccatcttcagcctgatttcatttttgcagacttcctatcgtcgtagttcaatatcctccacacaagcagataattgaagatcctccg |
76730 |
T |
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| Q |
124 |
tagcttccaaaactccaaatttaggaccatttctttcatgnnnnnnnnnattaccagaaataacactccctatcattgcacaaaagcctttcacacatct |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76729 |
tagcttccaaaactccaaatttaggaccatttctttcatatttttttttattaccagaaataacactccctatcattgcacaaaagcctttcacacatct |
76630 |
T |
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| Q |
224 |
tctt |
227 |
Q |
| |
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|||| |
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| T |
76629 |
tctt |
76626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 30416701 - 30416840
Alignment:
| Q |
24 |
gaagacaaatcccccatcttcagcctgatttcatttttgcagacttcctatcgtcgtagttcaatatcctccacacaagcagataattgaagatcctccg |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
30416701 |
gaagacaaatcccccatcttcagcctgatttcatttttgcagacttcctatcgtcgtagttcaatatcctccacacaagcagataattggagatccttcg |
30416800 |
T |
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| Q |
124 |
tagcttccaaaactccaaatttaggaccatttctttcatg |
163 |
Q |
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| T |
30416801 |
tagcttccaaaacttcaaatttaggaccatttctttcatg |
30416840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 35334176 - 35334136
Alignment:
| Q |
77 |
tcgtagttcaatatcctccacacaagcagataattgaagat |
117 |
Q |
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| T |
35334176 |
tcgtagttcaagatcctccacctaagcagataattgaagat |
35334136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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