View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_high_43 (Length: 236)
Name: NF20300_high_43
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 43717301 - 43717187
Alignment:
| Q |
7 |
tagattattctcatggttcaagttcaatggctgcagttggttgcttgcgtactattagcacaatacttgaatcagtgaacagtcttcctcaactttttgt |
106 |
Q |
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| T |
43717301 |
tagatttttctcatggttcaagttcaatggctgcagttggttgcttgcgtactattagcacaatacttgaatcagtgaacagtcttcctcaactttttgt |
43717202 |
T |
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| Q |
107 |
acaaatcgagcctac |
121 |
Q |
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| T |
43717201 |
acaaatcgagcctac |
43717187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 43716709 - 43716605
Alignment:
| Q |
132 |
cttggttatgtttatttccattatcttctatgcatggttacagatgtttttgaagaaattttggagattgtaccatatatgacttttttctctccaacaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716709 |
cttggttatgtttatttccattatcttctatgcatggttacagatgtttttgaattttttttggagattgtaccatatatgacttttttctctccaacaa |
43716610 |
T |
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| Q |
232 |
tatca |
236 |
Q |
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||||| |
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| T |
43716609 |
tatca |
43716605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 6814679 - 6814770
Alignment:
| Q |
143 |
ttatttccattatcttctatgcatggttacagatgtttttgaagaaattttggagattgtaccatatatgacttttttctctccaacaatatc |
235 |
Q |
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| T |
6814679 |
ttattttcattatct-ctatgcatgcttacagaggttttcgaagaagttttggagattgtatcatatatgacatttttctcaccatcaatatc |
6814770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 6814246 - 6814313
Alignment:
| Q |
39 |
gcagttggttgcttgcgtactattagcacaatacttgaatcagtgaacagtcttcctcaactttttgt |
106 |
Q |
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| T |
6814246 |
gcagttggttgtttacgtgctattagcacaatccttgaatcagtgagcaggcttcctcacctttttgt |
6814313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 52886499 - 52886597
Alignment:
| Q |
23 |
ttcaagttcaatggctgcagttggttgcttgcgtactattagcacaatacttgaatcagtgaacagtcttcctcaactttttgtacaaatcgagcctac |
121 |
Q |
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| T |
52886499 |
ttcaagttcaatggctgcagttggttgcttgcgtgctattagcacaatacttgaatcagtgagcagtcttcctcaactttttgttcaaatcgagcctac |
52886597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 52887152 - 52887251
Alignment:
| Q |
137 |
ttatgtttatttccattatcttctatgcatggttacagatgtttttgaagaaattttggagattgtaccatatatgacttttttctctccaacaatatca |
236 |
Q |
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|||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52887152 |
ttatatttatttccattgtcttctatgcatgcttacagaggtttttgaagaaattttggagattgtatcatatatgacttttttctctccaacaatatca |
52887251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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