View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_high_47 (Length: 223)

Name: NF20300_high_47
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_high_47
NF20300_high_47
[»] chr6 (14 HSPs)
chr6 (19-174)||(26651174-26651337)
chr6 (19-174)||(26757142-26757305)
chr6 (19-174)||(26966168-26966332)
chr6 (19-89)||(27422504-27422574)
chr6 (19-174)||(26631524-26631688)
chr6 (19-174)||(26737499-26737663)
chr6 (22-89)||(27714117-27714184)
chr6 (22-89)||(27702350-27702417)
chr6 (26-86)||(27652256-27652316)
chr6 (44-120)||(31289405-31289487)
chr6 (19-88)||(26890129-26890198)
chr6 (19-90)||(26828430-26828501)
chr6 (24-89)||(26628081-26628146)
chr6 (24-89)||(26734058-26734123)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-89)||(64789-64859)
[»] scaffold0349 (1 HSPs)
scaffold0349 (22-89)||(17760-17827)
[»] chr8 (1 HSPs)
chr8 (22-129)||(29269963-29270077)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26651174 - 26651337
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt------tcgaaagggcagtgaataatgct 112  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||      ||||||||||||||| |||||||    
T  26651174 atctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgct 26651273  T
Q  113 atgttttgagctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    ||| |||||||| |||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  26651274 atgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26651337  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26757142 - 26757305
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt------tcgaaagggcagtgaataatgct 112  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||      ||||||||||||||| |||||||    
T  26757142 atctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgct 26757241  T
Q  113 atgttttgagctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    ||| |||||||| |||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  26757242 atgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26757305  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26966168 - 26966332
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt------ttcgaaagggcagtgaataatgct 112  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||      ||||||||||||| ||||||||||    
T  26966168 atctgtagtcatctggctatttgcactgtcatgcgacatgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcagcgaataatgct 26966267  T
Q  113 a-tgttttgagctcag--ttactggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    |   |||| | |||||  ||||||||| |||| |||  ||||||||||||| |||||| ||||||    
T  26966268 acacttttcatctcagttttactggttgcagagtttgaagaatttcaatcttagtacaaaaattg 26966332  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 27422574 - 27422504
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  27422574 atctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgtt 27422504  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26631524 - 26631688
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt-------cgaaagggcagtgaataatgc 111  Q
    ||||||||||||||||| |  ||||||||| | | |||||||||||| ||||||||| | ||||||||||||       | |||||||||||| ||||||    
T  26631524 atctgtagtcatctggccacttgcattgtcct-caacatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgc 26631622  T
Q  112 tatgttttg-agctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    |||| || | ||||||||||  |||||| |||| |||||||||||||||| | |||||||||||||    
T  26631623 tatgcttcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattg 26631688  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26737499 - 26737663
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt-------cgaaagggcagtgaataatgc 111  Q
    ||||||||||||||||| |  ||||||||| | | |||||||||||| ||||||||| | ||||||||||||       | |||||||||||| ||||||    
T  26737499 atctgtagtcatctggccacttgcattgtcct-caacatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgc 26737597  T
Q  112 tatgttttg-agctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    |||| || | ||||||||||  |||||| |||| |||||||||||||||| | |||||||||||||    
T  26737598 tatgcttcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattg 26737663  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 27714184 - 27714117
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||  || |||||||||||||    
T  27714184 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcgcagaatccgtt 27714117  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 27702417 - 27702350
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||  || | |||||||||||    
T  27702417 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgtt 27702350  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 27652316 - 27652256
Alignment:
Q  26 gtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatcc 86  Q
    ||||||||||||| |||||||||||| || ||||||||| |||||||||||| || |||||    
T  27652316 gtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatcc 27652256  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 31289405 - 31289487
Alignment:
Q  44 ttgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt------ttcgaaagggcagtgaataatgctatgttttg 120  Q
    |||||||||||||||||||| | ||||||||| | ||||||||||      |||||||||||||||| |||||||||| ||||    
T  31289405 ttgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttg 31289487  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 26890129 - 26890198
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt 88  Q
    |||||||||||||||||||| |  | ||||||| || |||||||||| ||| ||||||| ||||||||||    
T  26890129 atctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgt 26890198  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 26828430 - 26828501
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt 90  Q
    ||||||||| ||||||||||  |||||||||||||  |||||||| | ||||||| ||| || |||||||||    
T  26828430 atctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgttt 26828501  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 26628081 - 26628146
Alignment:
Q  24 tagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||| | ||||||||||||| | |||||||||| ||||| ||||  || ||||||||    
T  26628081 tagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26628146  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 26734058 - 26734123
Alignment:
Q  24 tagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||| | ||||||||||||| | |||||||||| ||||| ||||  || ||||||||    
T  26734058 tagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26734123  T

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Target: scaffold0003 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 64789 - 64859
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  64789 atctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgtt 64859  T

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Target: scaffold0349 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 17760 - 17827
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||  || |||||||||||||    
T  17760 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcgcagaatccgtt 17827  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 29270077 - 29269963
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt------ttcgaaagggcagtgaataatgctatg 115  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||| || | || |||||||      |||||||||||||||| ||||| ||||    
T  29270077 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatg 29269978  T
Q  116 ttttg-agctcagtt 129  Q
     |||| |||||||||    
T  29269977 ctttgcagctcagtt 29269963  T

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