View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_high_48 (Length: 222)

Name: NF20300_high_48
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_high_48
NF20300_high_48
[»] chr1 (1 HSPs)
chr1 (52-207)||(12455174-12455329)
[»] chr4 (2 HSPs)
chr4 (65-121)||(5654501-5654557)
chr4 (67-96)||(30621753-30621782)
[»] chr3 (2 HSPs)
chr3 (65-99)||(21211381-21211415)
chr3 (68-96)||(47132184-47132212)
[»] chr5 (1 HSPs)
chr5 (67-96)||(11596398-11596427)
[»] chr7 (1 HSPs)
chr7 (67-115)||(38134335-38134383)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 12455329 - 12455174
Alignment:
Q  52 aagaagcgtgctagactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatccgtgtccgtgtccatgtatgtgcttcgtag 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12455329 aagaagcgtgctagactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatccgggtccgtgtccatgtatgtgcttcgtag 12455230  T
Q  152 gtcgcatgttcaaatcttgtaaacgggctctctgcttggaaactaaggctctgtgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12455229 gtcgcatgttcaaatcttgtaaacgggctctctgcttggaaactaaggctctgtgc 12455174  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 5654501 - 5654557
Alignment:
Q  65 gactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatc 121  Q
    ||||||||||||||||||||| |||||||||| || ||||| ||||| ||| |||||    
T  5654501 gactatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatc 5654557  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 30621753 - 30621782
Alignment:
Q  67 ctatgaagcacaaatactcctcggattagg 96  Q
    ||||||||||||||||||||||||||||||    
T  30621753 ctatgaagcacaaatactcctcggattagg 30621782  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 21211415 - 21211381
Alignment:
Q  65 gactatgaagcacaaatactcctcggattaggagt 99  Q
    |||||||||||||||| ||||||||||||||||||    
T  21211415 gactatgaagcacaaacactcctcggattaggagt 21211381  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 47132212 - 47132184
Alignment:
Q  68 tatgaagcacaaatactcctcggattagg 96  Q
    |||||||||||||||||||||||||||||    
T  47132212 tatgaagcacaaatactcctcggattagg 47132184  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 11596398 - 11596427
Alignment:
Q  67 ctatgaagcacaaatactcctcggattagg 96  Q
    ||||||||||||||||||||||||||||||    
T  11596398 ctatgaagcacaaatactcctcggattagg 11596427  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 38134335 - 38134383
Alignment:
Q  67 ctatgaagcacaaatactcctcggattaggagttttccgatgtcgaata 115  Q
    |||||||||||| | ||||||||||||||| || | |||||||||||||    
T  38134335 ctatgaagcacatacactcctcggattaggcgtgtcccgatgtcgaata 38134383  T

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