View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20300_low_12 (Length: 487)
Name: NF20300_low_12
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 44005130 - 44005410
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44005130 |
atcctacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
44005229 |
T |
|
| Q |
101 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44005230 |
ttctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
44005329 |
T |
|
| Q |
201 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaatattcaaagta |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44005330 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaatattcaaagta |
44005410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 44009056 - 44009331
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44009056 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcatt |
44009155 |
T |
|
| Q |
101 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44009156 |
gtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagct |
44009255 |
T |
|
| Q |
201 |
ttctttgatgccaaatcctttactctatccattactaattcaaagtaaataataatatgaagcttgaaaatattcaaagt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || || |||| |||||||| |||||||||||||||||| |
|
|
| T |
44009256 |
ttctttgatgccaaatcctttactctatccattacta----aatatatataaaaatatgaatcttgaaaatattcaaagt |
44009331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 44005463 - 44005600
Alignment:
| Q |
335 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatatagaaaagtagaaaacaaaattaattacagttaaattggataggaaa |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44005463 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatatagaaaagtagaaagcaaaattaattacagttaaattggataggaaa |
44005562 |
T |
|
| Q |
435 |
gagagaaaaggaaagatatttcagagatttgtttggat |
472 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44005563 |
gagagaaaaggaaagatctttcagagatttgtttggat |
44005600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 447
Target Start/End: Original strand, 44009386 - 44009500
Alignment:
| Q |
335 |
tacctcttatttatagtggctagtgaggaaagtggattgcattgtatataatatagaaaagtagaaaacaaaattaattacagttaaattggataggaaa |
434 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| | |||| ||||||||||||| |||||| || |||||| ||||||||||||||||||| |
|
|
| T |
44009386 |
tacctcttatttatagtggtttgtgaggaaagtggattgcaatatataatatatagaaaagtataaaacagaaataattatagttaaattggataggaaa |
44009485 |
T |
|
| Q |
435 |
g--agagaaaaggaa |
447 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
44009486 |
gaaagagaaaaggaa |
44009500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 39846852 - 39846625
Alignment:
| Q |
6 |
acaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcattgtcta |
105 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||| | | ||||||||||| ||||||||| |||||||| | |||||||| | |
|
|
| T |
39846852 |
acaaattttccaccaatgaacactgctggcactgaagggttacatccaagact---cctcaaagccctttccatttccctaccatagggttcattgtcaa |
39846756 |
T |
|
| Q |
106 |
gttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagctttctt |
205 |
Q |
| |
|
| |||| || |||||||||||||| || |||||||| | |||| | ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
39846755 |
gctcatgcacagcaggacttgctcctagctcatagaacaattgtgttatgctgtgacacatgtagcatgaactctttgtgaatataactgcagctttctt |
39846656 |
T |
|
| Q |
206 |
tgatgccaaatcctttactctatccattact |
236 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
39846655 |
tgatgccaaatccttcactctatccattact |
39846625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University