View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_17 (Length: 444)
Name: NF20300_low_17
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 181 - 430
Target Start/End: Complemental strand, 4058729 - 4058480
Alignment:
| Q |
181 |
gcttaactacacttaattaatacttacgggattaagagtgttgtgttctttgaaactctcttcgagaatgattgattggtctttggtgagtctaagtttt |
280 |
Q |
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| T |
4058729 |
gcttaactacacttaattaatacttacgggattaagagtgttgtgttctttgaaactctcttcgagaatgattgattggtctttggtgagtctaagtttt |
4058630 |
T |
|
| Q |
281 |
ttccttgaagtttcagcgtcttcttcatcacttattcctcttgaacaatctctttccatgtcaagatcttcaccggtaacttctctttcgcttcttttac |
380 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4058629 |
ttccttgaagtttcagcgtcttcttcatcactgattcctcttgaacaatctctttccatgtcaagatcttcaccggtaacttctctttcgcttcttttac |
4058530 |
T |
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| Q |
381 |
cactcacacttgaaacggtgctgtttggtgatgaaactcctgcttcttct |
430 |
Q |
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| T |
4058529 |
cactcacacttgaaacggtgctgtttggtgatgaaactcctgcttcttct |
4058480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 4058886 - 4058795
Alignment:
| Q |
12 |
atgaactaaccttgctctacgattttgaaaccaaacttcaacttgtctagcacgaagtcccaattgttttgcaagtgccaatttttgtttct |
103 |
Q |
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| T |
4058886 |
atgaactaaccttgctctacgattttgaaaccaaacttcaacttgtctagcacgaagtcccaattgttttgcaagtgccaatttttgtttct |
4058795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 312
Target Start/End: Original strand, 41452379 - 41452487
Alignment:
| Q |
204 |
ttacgggattaagagtgttgtgttctttgaaactctcttcgagaatgattgattggtctttggtgagtctaagttttttccttgaagtttcagcgtcttc |
303 |
Q |
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||||||||||||| || |||||||||||||| | ||||| ||||| |||||||||||| | |||||||||||||||||| | ||||||||||||||| |
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| T |
41452379 |
ttacgggattaagggtattgtgttctttgaaggtttcttcaagaatagctgattggtctttagagagtctaagttttttcctagcagtttcagcgtcttc |
41452478 |
T |
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| Q |
304 |
ttcatcact |
312 |
Q |
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||||||||| |
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| T |
41452479 |
ttcatcact |
41452487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 430
Target Start/End: Original strand, 41452520 - 41452590
Alignment:
| Q |
360 |
cttctctttcgcttcttttaccactcacacttgaaacggtgctgtttggtgatgaaactcctgcttcttct |
430 |
Q |
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| T |
41452520 |
cttctcttaagcttctttttccactaacacttgaaactgtgctgtttggagaagaaacccctgcttcttct |
41452590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 41452219 - 41452288
Alignment:
| Q |
34 |
ttttgaaaccaaacttcaacttgtctagcacgaagtcccaattgttttgcaagtgccaatttttgtttct |
103 |
Q |
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| T |
41452219 |
ttttgaaaccagacttctacttgtcttggacgaagaccaagttgctttgcaagtgccaacttttgcttct |
41452288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 23336215 - 23336132
Alignment:
| Q |
20 |
accttgctctacgattttgaaaccaaacttcaacttgtctagcacgaagtcccaattgttttgcaagtgccaatttttgtttct |
103 |
Q |
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|||||||||| | |||||||||||||||||||||||| | || || ||| ||| |||||||||||||| | |||||| |||| |
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| T |
23336215 |
accttgctcttctattttgaaaccaaacttcaacttgacgaggactaagattcaactgttttgcaagtgcaagtttttgcttct |
23336132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 23336039 - 23335995
Alignment:
| Q |
204 |
ttacgggattaagagtgttgtgttctttgaaactctcttcgagaa |
248 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||| |||| |
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| T |
23336039 |
ttacaggattaagagtggtgtgttctttgaaactttcttcaagaa |
23335995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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