View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_low_18 (Length: 434)

Name: NF20300_low_18
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_low_18
NF20300_low_18
[»] chr3 (8 HSPs)
chr3 (13-418)||(11490822-11491228)
chr3 (13-412)||(11497289-11497689)
chr3 (13-375)||(5051962-5052325)
chr3 (257-379)||(2919586-2919708)
chr3 (16-144)||(21539335-21539463)
chr3 (163-381)||(4130005-4130224)
chr3 (113-322)||(5965940-5966150)
chr3 (173-313)||(7492153-7492294)
[»] chr1 (1 HSPs)
chr1 (13-418)||(17311770-17312179)
[»] chr4 (1 HSPs)
chr4 (170-407)||(5988556-5988794)
[»] chr8 (1 HSPs)
chr8 (19-343)||(18388124-18388449)
[»] scaffold0603 (1 HSPs)
scaffold0603 (113-341)||(4605-4834)
[»] chr5 (1 HSPs)
chr5 (204-325)||(16446924-16447046)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 11490822 - 11491228
Alignment:
Q  13 aatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtat 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11490822 aatattcaaagcactgttttaaaggagccgatagataatggtagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtat 11490921  T
Q  113 tagcacattattccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||       |||||||||    
T  11490922 tagcacattattccagtaatccggggacaattcaatgtgaagaaattccgcaagttctataacagctaatggtaatccatcacatttttttgcaattttc 11491021  T
Q  213 ttgcctatttcttctagattggatcgttgttgctcgttacatg-cccaaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctca 311  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  11491022 ttgcctacttcttctagattggatcgttgttgctcgttacatgccccaaatgcatgtctggcaactaaagaccaacaatcttcgctttctagaggtctca 11491121  T
Q  312 aatagtggacataagaaaaagtttgcatggattttggtagtctttcatcccgtgttgtgatgatgatcttgcttcctctttttccagcatttaagatatc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11491122 aatagtggacataagaaaaagtttgcatggattttggtagtctttcatctcgtgttgtgatgatgatctcgcttcctctttttccagcatttaagatatc 11491221  T
Q  412 tataagt 418  Q
    |||||||    
T  11491222 tataagt 11491228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 11497289 - 11497689
Alignment:
Q  13 aatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtat 112  Q
    ||||| |||||||| ||||||||||||  || ||||| || ||| ||| |||||||||||||||||| | ||||  ||   |||||||||||||||| ||    
T  11497289 aatatgcaaagcaccgttttaaaggaggagaaagatagtggtagttcagttgtagagcaggttgcacgtcataacctattgattcccaaatgtcacgcat 11497388  T
Q  113 tagcacattattccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttc 212  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||  |||||| |  || ||||||||||||||  || | |||       ||||||| |    
T  11497389 tagcacattattccagtaatatggggacaattcaatgcgaagaaaagccgcaattgatactgcagctaatggtataccgtaacatttttttgcaatttcc 11497488  T
Q  213 ttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctca 311  Q
     |||| |||||||||||||||||||||||||  || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  11497489 ctgccaatttcttctagattggatcgttgtttgtcattacatgctccaaatgcatgcctggcaactaaagaccaacaatcttcgctttccagaggtttca 11497588  T
Q  312 aatagtggacataagaaaaagtttgcatggattttggtagtctttcatcccgtgttgtgatgatgatcttgcttcctctttttccagcatttaagatatc 411  Q
    |||||||||||||| |||| ||||||||||||||||| | ||||||||| |||||||||||||||||| | |||||  |||| ||||||| |||||||||    
T  11497589 aatagtggacataaaaaaaggtttgcatggattttggaactctttcatctcgtgttgtgatgatgatcctacttccctttttcccagcatgtaagatatc 11497688  T
Q  412 t 412  Q
    |    
T  11497689 t 11497689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 5052325 - 5051962
Alignment:
Q  13 aatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtat 112  Q
    |||||||||||||||||||||||||||| || ||| |||  |||||| ||||||| |||||||| ||   ||| ||||| ||||||||||||||||||||    
T  5052325 aatattcaaagcactgttttaaaggagctgaaagagaattgtagctcgattgtagcgcaggttggacgacatattgtaccaattcccaaatgtcacgtat 5052226  T
Q  113 tagcacattattccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttc 212  Q
    |||||||||||||||||||||| |||| |||||     |||||||   ||||| |  || ||||||||||||||||||||||||       |||||||||    
T  5052225 tagcacattattccagtaatcctgggaaaattcttcacgaagaaaactcgcaactgttactgcagctaatggtaatccatcacacttttctgcaattttc 5052126  T
Q  213 ttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctca 311  Q
     | || |||||||| ||||| ||| ||| ||| | ||||| ||  ||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||    
T  5052125 cttccaatttcttcaagatttgatagtttttggtagttacgtggtccaaatgcatgtctggcaactatagaccagcaatcttcgctttccaaaggtctca 5052026  T
Q  312 aatagtggacataagaaaaagtttgcatggattttggtagtctttcatcccgtgttgtgatgat 375  Q
    |||||||||||||| ||||  ||| |||||||||||| | ||||||||| ||||||||||||||    
T  5052025 aatagtggacataaaaaaagctttccatggattttggaactctttcatctcgtgttgtgatgat 5051962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 2919708 - 2919586
Alignment:
Q  257 ccaaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctcaaatagtggacataagaaaaagtttgcatggattttggtagtcttt 356  Q
    ||||||||||||||||| ||||||||||| ||||||||  |||||||| |||||| ||||||||||||| |||| |||||||||||| |||| | |||||    
T  2919708 ccaaatgcatgtctggcaactaaagaccagcaatcttctgtttccagatgtctcatatagtggacataaaaaaaggtttgcatggatattggaactcttt 2919609  T
Q  357 catcccgtgttgtgatgatgatc 379  Q
    |||| ||||| ||||||||||||    
T  2919608 catctcgtgtagtgatgatgatc 2919586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 21539335 - 21539463
Alignment:
Q  16 attcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatg-tacaaattcccaaatgtcacgtatta 114  Q
    ||||||||||| ||||||||||| |||| |||| ||| ||| ||||||||||| |||||||||| | |||||| ||| |||||||||||||||||  |||    
T  21539335 attcaaagcacggttttaaaggatccga-agatcatggtagttcaattgtagaacaggttgcacgtgataatggtaccaattcccaaatgtcacgagtta 21539433  T
Q  115 gcacattattccagtaatccggggacaatt 144  Q
     |||||||||||| |||||  |||||||||    
T  21539434 acacattattccaataatcttgggacaatt 21539463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 163 - 381
Target Start/End: Complemental strand, 4130224 - 4130005
Alignment:
Q  163 caagtcctattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttcttctagattggatcgttgttgctcgttacatgcc-caaa 261  Q
    ||||| ||||||||||||||||||| ||||||||       |||||||   | || |||| ||||||||||||||||||||| | ||||| ||   ||||    
T  4130224 caagtgctattgcagctaatggtaacccatcacattttttggcaatttctctaccaattttttctagattggatcgttgttggtagttacttgttacaaa 4130125  T
Q  262 tgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctcaaatagtggacataagaaaaagtttgcatggattttggtagtctttcatcc 361  Q
    |||||||||||| | ||||||||||||||||||  |||||| || ||| |||  ||||||| ||  ||| |||||||| | |  ||  | |||||||||     
T  4130124 tgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatct 4130025  T
Q  362 cgtgttgtgatgatgatctt 381  Q
    ||||||||||| ||||||||    
T  4130024 cgtgttgtgataatgatctt 4130005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 322
Target Start/End: Complemental strand, 5966150 - 5965940
Alignment:
Q  113 tagcacattattccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttc 212  Q
    |||||||| |||||||||||| ||||||||||   || ||||||  ||| ||||| ||| |||||| |||||| |||||| |||       |||| ||      
T  5966150 tagcacataattccagtaatctggggacaatttggtgcgaagaatatccccaagtgctactgcagcaaatggtgatccataacatttatttgcaacttct 5966051  T
Q  213 ttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctca 311  Q
     |||| |||||||||||||||||| |  |||| ||||||  | | ||||||||||| | ||| | ||||||||| |||||||| ||||||| |||| |||    
T  5966050 ctgccaatttcttctagattggattggcgttggtcgttatgttctccaaatgcatgcccggcaagtaaagaccagcaatcttcactttccaaaggtgtca 5965951  T
Q  312 aatagtggaca 322  Q
    | |||||||||    
T  5965950 agtagtggaca 5965940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 313
Target Start/End: Original strand, 7492153 - 7492294
Alignment:
Q  173 tgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctg 271  Q
    |||||| | |||||||||||||||       ||||||||| | ||  |||||||| |||  ||||||||||  | ||||||||| ||||||||||||||     
T  7492153 tgcagccattggtaatccatcacacttttttgcaattttcataccattttcttcttgatatgatcgttgtttgtagttacatgctccaaatgcatgtcta 7492252  T
Q  272 gccactaaagaccaacaatcttcgctttccagaggtctcaaa 313  Q
    |  ||||||||||| | ||||||  |||||| ||||||||||    
T  7492253 gaaactaaagaccatccatcttcaatttccaaaggtctcaaa 7492294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 17312179 - 17311770
Alignment:
Q  13 aatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtat 112  Q
    |||||||||||||| ||||||||||| ||   ||||||   ||||||||||||||||||||| | |  | ||||||||| ||||||||||| | | ||||    
T  17312179 aatattcaaagcaccgttttaaaggatccagaagataacagtagctcaattgtagagcaggtagaatatcataatgtaccaattcccaaattttatgtat 17312080  T
Q  113 tagcacattattccagtaatccgg---ggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaatt 209  Q
    ||| | ||||||| ||||||||||   ||||||||  |||  |||||| || |||||| ||| |||||||||||||||||||| |||       || |||    
T  17312079 taggaaattattcaagtaatccggctgggacaatttgatgcaaagaaaatctgcaagtgctactgcagctaatggtaatccataacattttattgccatt 17311980  T
Q  210 ttcttgcctatttcttctagattggatcgttgttgctcgttacatgccc-aaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtc 308  Q
    ||| | |||| |||||||| |||||||||||| || | ||||||||  | ||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  17311979 ttcctacctacttcttctaaattggatcgttgctggttgttacatgttctaaatgcatgtctggcaactaaagaccaacaatcttcgctttctagaggtc 17311880  T
Q  309 tcaaatagtggacataagaaaaagtttgcatggattttggtagtctttcatcccgtgttgtgatgatgatcttgcttcctctttttccagcatttaagat 408  Q
    ||||||||||||||||| |||| ||||||||||||||||| | ||||||||| ||||||||||| |||||| |||||||| ||||   ||||||||||||    
T  17311879 tcaaatagtggacataaaaaaaggtttgcatggattttggaactctttcatctcgtgttgtgataatgatcatgcttcctgttttcatagcatttaagat 17311780  T
Q  409 atctataagt 418  Q
    ||| ||||||    
T  17311779 atccataagt 17311770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 407
Target Start/End: Complemental strand, 5988794 - 5988556
Alignment:
Q  170 tattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgt 268  Q
    |||||||||| ||||||||||||||||       ||||||||| |||| |||||||||||||||||| ||| |   ||| | ||||  ||||||||||||    
T  5988794 tattgcagctgatggtaatccatcacatttttttgcaattttcctgccaatttcttctagattggattgttttatgtcgctgcatgtgccaaatgcatgt 5988695  T
Q  269 ctggccactaaagaccaacaatcttcgctttccagaggtctcaaatagtggacata-agaaaaagtttgcatggattttggtagtctttcatcccgtgtt 367  Q
    || || |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| | ||||||||||| |||  | ||||||||||| ||||    
T  5988694 ctagcaactaaagaccaacaatcttcactttccagaggtctcaaatagtggacagagagaaaga-tttgcatggatcttgcaactctttcatcccttgtt 5988596  T
Q  368 gtgatgatgatcttgcttcctctttttccagcatttaaga 407  Q
    |||||||||||| | |||||  |||| |||||||| ||||    
T  5988595 gtgatgatgatcctacttcccattttaccagcattaaaga 5988556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 18388449 - 18388124
Alignment:
Q  19 caaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtattagcac 118  Q
    |||||||| |||||||||||| ||||||||||   ||| |||||||||||||| | ||||| | ||||| ||| |||||||||||||||| |  |||| |    
T  18388449 caaagcaccgttttaaaggagtcgatagataactgtagatcaattgtagagcacggtgcacatcataatctaccaattcccaaatgtcactttctagcgc 18388350  T
Q  119 attattccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttcttgcct 218  Q
    || ||||||||||   |||||||| || | ||||||||| ||| |||||  ||||||||||||||||| ||| | |||       |||||||   | ||     
T  18388349 ataattccagtaacttggggacaaatctaagtgaagaaaatccccaagtgatattgcagctaatggtattccgtaacatttttttgcaatttctctacca 18388250  T
Q  219 atttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctcaaatagt 317  Q
    |||||||||||||  ||  |||| || | ||| || || | ||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||    
T  18388249 atttcttctagatcagactgttgctggttgttccaagctctaaatgcatgtctggcaactaaagaccagcaatcttcactctccagaggtctcaaatagt 18388150  T
Q  318 ggacataagaaaaagtttgcatggat 343  Q
    ||||  ||  ||| ||||||||||||    
T  18388149 ggaccgaatgaaaggtttgcatggat 18388124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 341
Target Start/End: Original strand, 4605 - 4834
Alignment:
Q  113 tagcacattattccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttc 212  Q
    |||||||| ||||||||||||  ||||||||| | ||  |||||  ||| ||||| ||| |||||| |||||| |||||| |||       |||||||      
T  4605 tagcacataattccagtaatctagggacaatttagtgcaaagaatatccccaagtgctactgcagcaaatggtgatccataacatttattagcaatttct 4704  T
Q  213 ttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatcttcgctttccagaggtctca 311  Q
    ||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||| |||  || | ||||||||| |||||||| |||||||||||| |||    
T  4705 ttgccaatttcttctagattggattgatgttggtcgttacatgctccaaatgcaagtccagcaagtaaagaccagcaatcttcactttccagaggtgtca 4804  T
Q  312 aatagtggacataagaaaaagtttgcatgg 341  Q
    | ||||||||| ||  ||| ||||||||||    
T  4805 agtagtggacagaaagaaaggtttgcatgg 4834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 16447046 - 16446924
Alignment:
Q  204 gcaattttcttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatcttcgctttcca 302  Q
    ||||||| | |||| |||||||||||||||| || || ||| | ||||||||  ||||||||||||||||| | ||||||||| |||||||| ||||| |    
T  16447046 gcaatttccctgccaatttcttctagattggttctttcttggtagttacatggtccaaatgcatgtctggcaattaaagaccagcaatcttcactttcga 16446947  T
Q  303 gaggtctcaaatagtggacataa 325  Q
    |||||||||||||||| ||||||    
T  16446946 gaggtctcaaatagtgaacataa 16446924  T

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