View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_20 (Length: 418)
Name: NF20300_low_20
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 11900906 - 11901290
Alignment:
| Q |
20 |
gtgtagactaatggaaaaaaggaaatgcttaacatagcaaagagcaacatcacgagaggtagtgagcgctatacaattgaaaacggctgggacacgccca |
119 |
Q |
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| T |
11900906 |
gtgtagactaatggaaaaaaggaaatgcttaacatagcgaagagcaacatcacgagaggtagtgagcactatacaattgaaaacggctgggacacgccca |
11901005 |
T |
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| Q |
120 |
cgggttcactattcatgaaccactaactatatatagtataccaagaggtttaagacaatcaatcaaattcattagtatgatataacttcacaaatggttc |
219 |
Q |
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| T |
11901006 |
cgggttcactattcatgaaccactaactatatatagtatactaagaggtttaagacaatcaatcaaattcattagtatgatataacttcacaaatggttc |
11901105 |
T |
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| Q |
220 |
atcagttaccctttatatcctcaacaaatgggtaacttccttgatgaaattattacaaaaaccgacagcaactcacctccatactacctaaattcgaatg |
319 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901106 |
atcagttaccctttatatcctcaacaaatggg----ttccttgatgaaattattacaaaaaccgacagcaactcacctccatactacctaaattcgaatg |
11901201 |
T |
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| Q |
320 |
gagaaagtttacatttgtagcactaacacttcagattgaatgtgtctagagtaaaacactgatacatgagattacattaaatacctatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11901202 |
gagaaagtttacatttgtagcactaacacttcagattgaatgtgtctagagtaaaacactgatacatgagattacattaaatacttatg |
11901290 |
T |
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