View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_low_22 (Length: 418)

Name: NF20300_low_22
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_low_22
NF20300_low_22
[»] chr6 (9 HSPs)
chr6 (252-413)||(8370307-8370474)
chr6 (252-413)||(15137762-15137929)
chr6 (254-413)||(513253-513418)
chr6 (252-413)||(34844512-34844679)
chr6 (24-100)||(513028-513104)
chr6 (252-406)||(2851599-2851762)
chr6 (25-100)||(8370086-8370161)
chr6 (25-100)||(15138075-15138150)
chr6 (25-99)||(34844291-34844365)
[»] chr3 (3 HSPs)
chr3 (254-413)||(35203728-35203893)
chr3 (26-100)||(35203506-35203580)
chr3 (334-370)||(21654315-21654351)
[»] chr7 (5 HSPs)
chr7 (252-413)||(3626115-3626282)
chr7 (252-388)||(34902754-34902898)
chr7 (25-99)||(3625893-3625967)
chr7 (338-389)||(15995773-15995824)
chr7 (334-395)||(22632137-22632198)
[»] chr2 (9 HSPs)
chr2 (252-413)||(21467115-21467282)
chr2 (252-413)||(26647475-26647642)
chr2 (252-413)||(33224763-33224930)
chr2 (252-413)||(24840310-24840477)
chr2 (25-100)||(33225076-33225151)
chr2 (24-99)||(24840087-24840162)
chr2 (25-99)||(21467430-21467504)
chr2 (24-57)||(43332241-43332274)
chr2 (334-370)||(43075819-43075855)
[»] chr5 (3 HSPs)
chr5 (252-413)||(39175680-39175847)
chr5 (25-100)||(39175999-39176074)
chr5 (334-369)||(30086600-30086635)
[»] chr4 (8 HSPs)
chr4 (252-382)||(34132795-34132930)
chr4 (252-382)||(53912584-53912719)
chr4 (252-406)||(29581318-29581481)
chr4 (20-100)||(53912868-53912948)
chr4 (252-406)||(21180861-21181027)
chr4 (25-99)||(34133077-34133151)
chr4 (338-395)||(35310791-35310848)
chr4 (51-99)||(29580950-29580998)
[»] chr8 (3 HSPs)
chr8 (252-370)||(28522434-28522557)
chr8 (25-100)||(28522213-28522288)
chr8 (353-397)||(13144018-13144062)
[»] chr1 (1 HSPs)
chr1 (334-370)||(43656092-43656128)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 8370307 - 8370474
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  8370307 caaaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 8370406  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  8370407 catggaaagaagtaaaaataatttgcataagttattggttacggaaaaaatgtgagggagagtaattt 8370474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 252 - 413
Target Start/End: Complemental strand, 15137929 - 15137762
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  15137929 caaaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 15137830  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||    
T  15137829 catggaaagaagtaaaaataattttcataagttattggttacggaaaaaatgtgagggagagtaattt 15137762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 254 - 413
Target Start/End: Original strand, 513253 - 513418
Alignment:
Q  254 aaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgtttca 348  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||||    
T  513253 aaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgtttca 513352  T
Q  349 tggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||||||    
T  513353 tggaaagaagtaaaaataatttgcataagttattggttacggaaaaaatatgagggagagtaattt 513418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 34844512 - 34844679
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  34844512 caaaatctatcaaatcaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 34844611  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||    
T  34844612 catggaaagaagtaaaaataatttacataagttattggttacggaaaaaatgtgagggagagtaattt 34844679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 513028 - 513104
Alignment:
Q  24 acagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  513028 acagtggcgtagccaggatcctgaagtagggggttcagacctttcaactttactagagctatgaaagttttgtgcag 513104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 406
Target Start/End: Complemental strand, 2851762 - 2851599
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgta-----tgttgtg---ttgaaatatg 343  Q
    ||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||     | |||||   |||| ||| |    
T  2851762 caaaatctatcaaatgaaaattagaatttgtgtagattttaaatttataattctaaagcataataattcggtgtataactttttgtgttcttgagataag 2851663  T
Q  344 tttcatggaaagaagtaaaaataatttgcataagttattggttatgga-aaaatgtgagggaga 406  Q
    ||||| || |||||||||| |||||||||||| ||||||||||| ||| |||||| ||||||||    
T  2851662 tttcacgggaagaagtaaacataatttgcataggttattggttacggagaaaatgggagggaga 2851599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 8370086 - 8370161
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  8370086 cagtggcgtagccaggatcctggagtagggagttcagacctttcaactttactagagctatgaaagttttatgcag 8370161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 15138150 - 15138075
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  15138150 cagtggcgtagccaggatcctagagtaaggggttcagacctttcaactttatcagagctatgaaagttttgtgcag 15138075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 34844291 - 34844365
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgca 99  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||    
T  34844291 cagtggcgtagccaggattctggagtagagggttcagacctttcaactttaccagagctacgaaagttttgtgca 34844365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 254 - 413
Target Start/End: Original strand, 35203728 - 35203893
Alignment:
Q  254 aaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgtttca 348  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||||    
T  35203728 aaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgtttca 35203827  T
Q  349 tggaaagaagtaaaaataatttgcataagttattggtta-tggaaaaatgtgagggagaataattt 413  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||    
T  35203828 tggaaagaagtaaaaataatttgcataagttattggttacagaaaaaatgtgagggagagtaattt 35203893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 35203506 - 35203580
Alignment:
Q  26 agtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  35203506 agtggcgtagccaggatcctggagtagggggttcagacctttcaactttatcagagctatgaaagttttgtgcag 35203580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 21654351 - 21654315
Alignment:
Q  334 ttgaaatatgtttcatggaaagaagtaaaaataattt 370  Q
    |||||||| |||||||||||||| |||||||||||||    
T  21654351 ttgaaataagtttcatggaaagatgtaaaaataattt 21654315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 3626115 - 3626282
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  3626115 caaaatctatcaaatcaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 3626214  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||    
T  3626215 catggaaagaagtaaaaataatttacataagttattggttacggaaaaaatgtgagggagagtaattt 3626282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 34902898 - 34902754
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtg---ttgaaatatg 343  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     || |||||   |||||||| |    
T  34902898 caaaatctatcaaatgaaagttagaatttgtgtagattataaatttataattctaaagcataataatttggtgtataacattttgtgttcttgaaataag 34902799  T
Q  344 tttcatggaaagaagtaaaaataatttgcataagttattggttat 388  Q
    ||||| || || ||||||| |||||||||||| |||||| |||||    
T  34902798 tttcacgggaaaaagtaaatataatttgcataggttattcgttat 34902754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 3625893 - 3625967
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgca 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  3625893 cagtggcgtagccaggatcttggagtagggggttcagacctttcaactttaccagagctatgaaagttttgtgca 3625967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 15995824 - 15995773
Alignment:
Q  338 aatatgtttcatggaaagaagtaaaaataatttgcataagttattggttatg 389  Q
    |||| |||||||||||||| ||||||||||||| |||  |||||||||||||    
T  15995824 aataagtttcatggaaagatgtaaaaataatttccattggttattggttatg 15995773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 22632198 - 22632137
Alignment:
Q  334 ttgaaatatgtttcatggaaagaagtaaaaataatttgcataagttattggttatggaaaaa 395  Q
    |||||||| ||||||||| |||| ||||||| ||||| |||  | |||||||||||||||||    
T  22632198 ttgaaataagtttcatgggaagatgtaaaaacaattttcattggatattggttatggaaaaa 22632137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 252 - 413
Target Start/End: Complemental strand, 21467282 - 21467115
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  21467282 caaaatctatcaaatcaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 21467183  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||    
T  21467182 catggaaagaagtaaaaataatttacataagttattggttacggaaaaaatgtgagggagagtaattt 21467115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 26647475 - 26647642
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  26647475 caaaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 26647574  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
     |||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||    
T  26647575 tatggaaagaagtaaaaataatttgcataagttattggttacggaaaaaatgtgaggaagagtaattt 26647642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 252 - 413
Target Start/End: Complemental strand, 33224930 - 33224763
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  33224930 caaaatctatcaaatgaaaattagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtattacattttgtgttgaaatatgttt 33224831  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
    ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  33224830 catgggaagaagtaaaaataatttgcataagttattggttacggaaaaaatgtgagggagagtaattt 33224763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 24840310 - 24840477
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  24840310 caaaatctatcaaatcaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 24840409  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggtta-tggaaaaatgtgagggagaataattt 413  Q
    |||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||| ||||||    
T  24840410 catggaaagaagtaaaaataatttacataagttattggttacagaaaaaatgtgagggagagtaattt 24840477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 33225151 - 33225076
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33225151 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactagagctatgaaagttttgtgcag 33225076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 24840087 - 24840162
Alignment:
Q  24 acagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  24840087 acagtggcgtagccaggatcctggagtagggggttcagacctttcaactttaccagagctatgaaagttttgtgca 24840162  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 21467504 - 21467430
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgca 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  21467504 cagtggcgtagtcaggatcctggagtagggggttcagacctttccactttaccagagctatgaaagttttgtgca 21467430  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 43332274 - 43332241
Alignment:
Q  24 acagtggcgtagccaggatcctggagtagggggt 57  Q
    ||||||||||||||||||||||||||||||||||    
T  43332274 acagtggcgtagccaggatcctggagtagggggt 43332241  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 43075855 - 43075819
Alignment:
Q  334 ttgaaatatgtttcatggaaagaagtaaaaataattt 370  Q
    |||||||| |||||||||||||| |||||||||||||    
T  43075855 ttgaaataagtttcatggaaagatgtaaaaataattt 43075819  T

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Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 252 - 413
Target Start/End: Complemental strand, 39175847 - 39175680
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  39175847 caaaatctatcaaatgaaagtaagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 39175748  T
Q  347 catggaaagaagtaaaaataatttgcataagttattggttatgg-aaaaatgtgagggagaataattt 413  Q
     |||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||    
T  39175747 tatggaaagaagtaaaaataatttgcataagttattggttacggaaaaaatgtgaggaagagtaattt 39175680  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 39176074 - 39175999
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||  | | |||||||||||||||||||    
T  39176074 cagtggcgtagccaggatcctagagtagggggttcagacctttcaactttatcagaactatgaaagttttgtgcag 39175999  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 369
Target Start/End: Original strand, 30086600 - 30086635
Alignment:
Q  334 ttgaaatatgtttcatggaaagaagtaaaaataatt 369  Q
    |||||||| |||||||||||||||||||||||||||    
T  30086600 ttgaaataagtttcatggaaagaagtaaaaataatt 30086635  T

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Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 252 - 382
Target Start/End: Complemental strand, 34132930 - 34132795
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  34132930 caaaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 34132831  T
Q  347 catggaaagaagtaaaaataatttgcataagttatt 382  Q
    |||||||||||||||||||||||| |||||||||||    
T  34132830 catggaaagaagtaaaaataatttacataagttatt 34132795  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 252 - 382
Target Start/End: Complemental strand, 53912719 - 53912584
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  53912719 caaaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 53912620  T
Q  347 catggaaagaagtaaaaataatttgcataagttatt 382  Q
    |||||||||||||||||||||||| |||||||||||    
T  53912619 catggaaagaagtaaaaataatttacataagttatt 53912584  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 252 - 406
Target Start/End: Original strand, 29581318 - 29581481
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgta-----tgttgtg---ttgaaatatg 343  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||     | |||||   ||||||||||    
T  29581318 caaaatctatcaaatgaaagttagaatttttgcaaattataaatttataattctaaagcataataatttggtgtataattttttgtgttcttgaaatatg 29581417  T
Q  344 tttcatggaaagaagtaaaaataatttgcataagttattggttatgga-aaaatgtgagggaga 406  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||    
T  29581418 tttcacgggaagaagtaaaaataatttgcataggttattggttacggagaaaatgggagggaga 29581481  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 53912948 - 53912868
Alignment:
Q  20 atatacagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  53912948 atatacagtggcgtagccaggatcctggaatagggggttcggacctttcaactttactagagctatgaaagttttgtgcag 53912868  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 252 - 406
Target Start/End: Original strand, 21180861 - 21181027
Alignment:
Q  252 caaaatctatcgaatgaaagttagaat-----ttgtgtaaattataaatttataattctaaagcataataatttggtgta----tgttgtg---ttgaaa 339  Q
    ||||||||||| |||||||||||||||     ||||||| ||||||||||||||||||||||| ||||||||||||||||    | |||||   ||||||    
T  21180861 caaaatctatcaaatgaaagttagaatataatttgtgtagattataaatttataattctaaagtataataatttggtgtataacttttgtgttcttgaaa 21180960  T
Q  340 tatgtttcatggaaagaagtaaaaataatttgcataagttattggttatggaaaaatgtgagggaga 406  Q
    || |||||| || |||||||||| |||||||||||| ||||||||||| |  |||||| ||||||||    
T  21180961 taagtttcacgggaagaagtaaacataatttgcataggttattggttaggagaaaatgggagggaga 21181027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 34133151 - 34133077
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgca 99  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  34133151 cagtggcgtagccaggatcttgaagtagggggttcatacctttcaactttaccagagctatgaaagttttgtgca 34133077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 35310791 - 35310848
Alignment:
Q  338 aatatgtttcatggaaagaagtaaaaataatttgcataagttattggttatggaaaaa 395  Q
    |||| |||||||||||||| ||||||| ||||| |||  | |||||||||||||||||    
T  35310791 aataagtttcatggaaagatgtaaaaacaattttcattggctattggttatggaaaaa 35310848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 29580950 - 29580998
Alignment:
Q  51 agggggttcagacctttcaactttactaaagctatgaaagttttgtgca 99  Q
    ||||||||||||||||||||||||| || || ||  |||||||||||||    
T  29580950 agggggttcagacctttcaactttattagagataccaaagttttgtgca 29580998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 28522434 - 28522557
Alignment:
Q  252 caaaatctatcgaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgt-----atgttgtgttgaaatatgttt 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||    
T  28522434 caaaatctatcaaatgaaagttagaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgttgaaatatgttt 28522533  T
Q  347 catggaaagaagtaaaaataattt 370  Q
    ||||||||||||||||||||||||    
T  28522534 catggaaagaagtaaaaataattt 28522557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 28522213 - 28522288
Alignment:
Q  25 cagtggcgtagccaggatcctggagtagggggttcagacctttcaactttactaaagctatgaaagttttgtgcag 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28522213 cagtggcgtagccaggattctggagtagggggttcagacctttcaactttactagagctatgaaagttttgtgcag 28522288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 13144018 - 13144062
Alignment:
Q  353 aagaagtaaaaataatttgcataagttattggttatggaaaaatg 397  Q
    |||| ||||||| ||||| ||| ||||||||||||||||||||||    
T  13144018 aagatgtaaaaacaattttcattagttattggttatggaaaaatg 13144062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 43656092 - 43656128
Alignment:
Q  334 ttgaaatatgtttcatggaaagaagtaaaaataattt 370  Q
    |||||||| |||||||||||||| |||||||||||||    
T  43656092 ttgaaataagtttcatggaaagatgtaaaaataattt 43656128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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