View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20300_low_25 (Length: 399)
Name: NF20300_low_25
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 40182079 - 40181707
Alignment:
| Q |
15 |
cataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtttgtctccaaccgattctcactcgcaaactatatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40182079 |
cataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtctgtctccaaccgattctcactcgcaaactatatat |
40181980 |
T |
|
| Q |
115 |
aagaagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttctt------cttcctcctcatcatcatccacacgaagaattccta |
208 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40181979 |
atgcagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttcttcttcttcttcctccttatcatcatccacacgaagaattccta |
40181880 |
T |
|
| Q |
209 |
accctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgacaacgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40181879 |
accctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgacaacgt |
40181780 |
T |
|
| Q |
309 |
catcaccgcctccaaagatttccagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtac |
381 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40181779 |
catcaccgcctccaaagatttacagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtac |
40181707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 360
Target Start/End: Complemental strand, 38606264 - 38606229
Alignment:
| Q |
325 |
gatttccagaaagtgatgagtcttcttagtaatgct |
360 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38606264 |
gatttccataaagtgatgagtcttcttagtaatgct |
38606229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 356
Target Start/End: Original strand, 44459145 - 44459176
Alignment:
| Q |
325 |
gatttccagaaagtgatgagtcttcttagtaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44459145 |
gatttccagaaagtgatgagtcttcttagtaa |
44459176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 356
Target Start/End: Original strand, 44466678 - 44466709
Alignment:
| Q |
325 |
gatttccagaaagtgatgagtcttcttagtaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44466678 |
gatttccagaaagtgatgagtcttcttagtaa |
44466709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University