View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_low_26 (Length: 379)

Name: NF20300_low_26
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_low_26
NF20300_low_26
[»] chr5 (12 HSPs)
chr5 (1-273)||(5116064-5116348)
chr5 (281-360)||(5116406-5116485)
chr5 (165-249)||(27821967-27822051)
chr5 (165-249)||(2494012-2494096)
chr5 (165-249)||(5628682-5628766)
chr5 (165-249)||(20875813-20875897)
chr5 (165-249)||(25058142-25058226)
chr5 (165-249)||(42826326-42826410)
chr5 (165-249)||(5898305-5898389)
chr5 (165-249)||(41555734-41555818)
chr5 (167-261)||(28471176-28471270)
chr5 (100-149)||(41335428-41335477)
[»] chr7 (5 HSPs)
chr7 (165-249)||(27254422-27254506)
chr7 (165-249)||(40756172-40756256)
chr7 (165-249)||(27265845-27265929)
chr7 (165-249)||(26405162-26405246)
chr7 (165-249)||(28348432-28348516)
[»] chr4 (6 HSPs)
chr4 (165-249)||(25596727-25596811)
chr4 (165-249)||(41294747-41294831)
chr4 (165-249)||(43631693-43631777)
chr4 (165-249)||(35306307-35306391)
chr4 (187-249)||(20214685-20214747)
chr4 (173-222)||(45069001-45069050)
[»] chr2 (6 HSPs)
chr2 (165-249)||(31669185-31669269)
chr2 (165-249)||(8549740-8549824)
chr2 (165-249)||(4200327-4200411)
chr2 (166-222)||(34663382-34663438)
chr2 (165-232)||(7087177-7087244)
chr2 (165-223)||(8291833-8291891)
[»] chr8 (2 HSPs)
chr8 (165-249)||(7827921-7828005)
chr8 (165-249)||(40846967-40847051)
[»] chr3 (6 HSPs)
chr3 (165-249)||(21183880-21183964)
chr3 (165-249)||(30894814-30894898)
chr3 (165-249)||(49005560-49005644)
chr3 (165-249)||(51774691-51774775)
chr3 (165-246)||(53142110-53142191)
chr3 (166-222)||(1547193-1547249)
[»] chr1 (6 HSPs)
chr1 (165-249)||(14517442-14517526)
chr1 (165-249)||(48349897-48349981)
chr1 (165-249)||(49913803-49913887)
chr1 (165-248)||(27053517-27053600)
chr1 (165-246)||(9773010-9773091)
chr1 (41-135)||(9773133-9773227)
[»] chr6 (3 HSPs)
chr6 (167-249)||(32639133-32639215)
chr6 (165-249)||(7689968-7690052)
chr6 (165-249)||(32636314-32636398)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 5116064 - 5116348
Alignment:
Q  1 ctcttgtgatccattcactaaacattgcatggacgtgcttaaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgagaggggttt 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116064 ctcttgtgatccattcactaaacattgcatgcacgcgcttaaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgagaggggttt 5116163  T
Q  101 actttctctgtctgtgaaacaatcaactatagagacaaaaggtcaatgaaaactttta------------aggcatggtggtgtgattgtggggaatttc 188  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||            ||||||||||||||||||||||| ||||||    
T  5116164 actttctctgtctctgaaacaatcaactatagagacaaaaggccaatgagaacttttaaggtagacctacaggcatggtggtgtgattgtgggaaatttc 5116263  T
Q  189 aagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgactatagagtccttatcccataggtgtt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116264 aagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgactatagagtccttatcccataggtgtt 5116348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 5116406 - 5116485
Alignment:
Q  281 gagttattgaccccatatgaaggtccaagcttttgccaatccagccttgcgatgactgaaaaaagatcaacccaacatta 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116406 gagttattgaccccatatgaaggtccaagcttttgccaatccagccttgcgatgactgaaaaaagatcaacccaacatta 5116485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 27821967 - 27822051
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| |||||||| | ||||||||||||||    
T  27821967 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtattcttcatttcaccatgacta 27822051  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 2494096 - 2494012
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| | |||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  2494096 ggtggtgtgattgtgggaaatttcaagctttacatttaccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 2494012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 5628682 - 5628766
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  5628682 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 5628766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 20875897 - 20875813
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  20875897 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 20875813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 25058226 - 25058142
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  25058226 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 25058142  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 42826410 - 42826326
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  42826410 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 42826326  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 5898305 - 5898389
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| | || ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  5898305 ggtggtgtgattgtgggaaatttcaagctttacattttccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 5898389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 41555818 - 41555734
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||  ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  41555818 ggtggtgtgattgtggaaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 41555734  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 28471270 - 28471176
Alignment:
Q  167 tggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgactatagagtccttat 261  Q
    ||||||||||||||  ||| ||||| ||||||| |||||||||| |||||||||| | ||| |||| | ||||||||||| |||| | |||||||    
T  28471270 tggtgtgattgtggaaaatatcaagctttacatttgccttgttcccatgtcatagtcgcgtgttcttcatttcaccatgattatacaatccttat 28471176  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 41335477 - 41335428
Alignment:
Q  100 tactttctctgtctgtgaaacaatcaactatagagacaaaaggtcaatga 149  Q
    ||||||||||||||||||||||||||| ||||| ||   |||||||||||    
T  41335477 tactttctctgtctgtgaaacaatcaaatatagggagggaaggtcaatga 41335428  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 27254422 - 27254506
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  27254422 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 27254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 40756172 - 40756256
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  40756172 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 40756256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 27265845 - 27265929
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||||||| |||||||||||| ||| |||| | |||  |||||||||    
T  27265845 ggtggtgtgattgtgggaaattttaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcattttgccatgacta 27265929  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 26405162 - 26405246
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| | || ||||| ||||| |||||| ||| |||| | |||| |||||||||    
T  26405162 ggtggtgtgattgtgggaaatttcaagctttacattttccatgttctcatgttatagccgcgtgttcttcatttcgccatgacta 26405246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 28348432 - 28348516
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| ||||||||| || ||| |||| | |||| |||||||||    
T  28348432 ggtggtgtgattgtgcgaaatttcaagctttacatttgccatgttctcatgtcataaccgcgtgttcttcatttcgccatgacta 28348516  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 25596727 - 25596811
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||| ||||||||||| |||| | |||| |||||||||    
T  25596727 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatggcatagccacgtgttcttcatttcgccatgacta 25596811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 41294831 - 41294747
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  41294831 ggtggtgtgattgtggaaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 41294747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 43631777 - 43631693
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||  || |||| | |||| |||||||||    
T  43631777 ggtggtgtgattgtgggaaatttcaagttttagatttgccttgttcccatgtcatagccgtgtgttcttcatttcgccatgacta 43631693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 35306391 - 35306307
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    |||| |||||||||||| ||||||||| ||||||| |||||||||  |||||||||||| ||| |||| | |||| |||||||||    
T  35306391 ggtgatgtgattgtgggaaatttcaagctttacatctgccttgtttccatgtcatagccgcgtgttcttcgtttcgccatgacta 35306307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 20214747 - 20214685
Alignment:
Q  187 tcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||| || |||| |||||||||| |||||||||||| ||| |||| | ||||||||||||||    
T  20214747 tcaagcttcacatttgccttgttcccatgtcatagccgcgtgttcttcatttcaccatgacta 20214685  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 45069050 - 45069001
Alignment:
Q  173 gattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 222  Q
    ||||||||  ||||||||| ||||||| ||||||||||||||||| ||||    
T  45069050 gattgtggaaaatttcaagctttacatgtgccttgttcacatgtcttagc 45069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 31669185 - 31669269
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  31669185 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 31669269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 8549740 - 8549824
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| | ||| |||||||||||| ||| |||| | |||| |||||||||    
T  8549740 ggtggtgtgattgtgggaaatttcaagctttacatttgccatattctcatgtcatagccgcgtgttcttcatttcgccatgacta 8549824  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 4200327 - 4200411
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| | |||||||||| | | |||| | |||| |||||||||    
T  4200327 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcttgtcatagccgcatgttcttcatttcgccatgacta 4200411  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 34663382 - 34663438
Alignment:
Q  166 gtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 222  Q
    |||||||||||||||| ||||||| | ||| |||||||||||||||||||| |||||    
T  34663382 gtggtgtgattgtgggaaatttcaggctttccatatgccttgttcacatgttatagc 34663438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 7087244 - 7087177
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattct 232  Q
    ||||||||||||||||| | ||||||| ||||||| |||| ||||| ||||||||| |||||| ||||    
T  7087244 ggtggtgtgattgtgggaagtttcaagctttacatttgccatgttcccatgtcataaccacgtgttct 7087177  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 8291833 - 8291891
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagcc 223  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| ||||||||||||    
T  8291833 ggtggtgtgattgtgagaaatttcaagctttacatttgccatgttcccatgtcatagcc 8291891  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 7828005 - 7827921
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  7828005 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 7827921  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 40846967 - 40847051
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||  || |||| | |||| |||||||||    
T  40846967 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagccgtgtgttcttcatttcgccatgacta 40847051  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 21183880 - 21183964
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  21183880 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 21183964  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 30894814 - 30894898
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  30894814 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 30894898  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 49005560 - 49005644
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  49005560 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 49005644  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 51774775 - 51774691
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  51774775 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 51774691  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 53142110 - 53142191
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatga 246  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| ||||||    
T  53142110 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatga 53142191  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 1547193 - 1547249
Alignment:
Q  166 gtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 222  Q
    |||||||||||||||| |||||||   ||| |||| |||||||||||||||||||||    
T  1547193 gtggtgtgattgtgggaaatttcagactttccataagccttgttcacatgtcatagc 1547249  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 14517442 - 14517526
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  14517442 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 14517526  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 48349897 - 48349981
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  48349897 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 48349981  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 49913803 - 49913887
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | ||||  ||||||||    
T  49913803 ggtggtgtgattgtggaaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgtcatgacta 49913887  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 27053517 - 27053600
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgact 248  Q
    ||||||||||||||| | ||| ||||| ||||||| || ||||||| |||||||||||| ||| |||| | |||||||||||||    
T  27053517 ggtggtgtgattgtgcgaaatatcaagctttacatttgtcttgttcccatgtcatagccgcgtgttcttcatttcaccatgact 27053600  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 9773091 - 9773010
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatga 246  Q
    ||||||||||||||||   |||||||| |||||||| || || || ||||||||||| | ||| ||||| ||||||||||||    
T  9773091 ggtggtgtgattgtggtagatttcaagctttacatacgcgttattgacatgtcatagtcgcgtgttctagctttcaccatga 9773010  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 9773227 - 9773133
Alignment:
Q  41 aaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgagaggggtttactttctctgtctgtgaaacaatcaactatagaga 135  Q
    |||||||| |||||||| ||||||| ||| ||||| || || || || |||||| | |||||||| |||  ||||||||||| ||||||| ||||    
T  9773227 aaggaagacgtgggtaagtccaacactcaccaagttgaacaattcgatcgagagagatttactttttcttcctgtgaaacaaccaactatggaga 9773133  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 32639133 - 32639215
Alignment:
Q  167 tggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||| ||||||||| ||| ||||| ||||||| |||||||||| ||| |||||||| ||| |||| | ||||||||||||||    
T  32639133 tggtgcgattgtgggaaatatcaagctttacatctgccttgttcccatttcatagccgcgtgttctccatttcaccatgacta 32639215  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 7689968 - 7690052
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| |||||||||||| ||| || | | |||| |||||||||    
T  7689968 ggtggtgtgattgtgagaaatttcaagctttacatttgccatgttctcatgtcatagcctcgtgttgttcatttcgccatgacta 7690052  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 32636398 - 32636314
Alignment:
Q  165 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 249  Q
    |||||||||||||||   ||| ||||| ||||||| |||||||||| || ||||||| | ||| |||| | ||||||||||||||    
T  32636398 ggtggtgtgattgtgcaaaatatcaagctttacatttgccttgttcccaagtcatagtcgcgtgttcttcatttcaccatgacta 32636314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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