View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_28 (Length: 369)
Name: NF20300_low_28
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 25702655 - 25702301
Alignment:
| Q |
1 |
tctcttattagtattatcatttcagcaaaaaatgatgttagnnnnnnngtttgtctttaactgtctagaccagaatccaattccataaagtattacaaac |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702655 |
tctcttattagtattctcatttcagcaaaaaatgatgtaattttttttgtttgtctttaactgtctagaccagaatccaattccataaagtattacaaac |
25702556 |
T |
|
| Q |
101 |
tatgtaatactgacacggttctgatagaaagcttgtccggacatgaaaaatgtgattccgttcccttaatttattttctcatatttttattgatatcgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702555 |
tatgtaatactgacacggttctgatagaaagcttgtccggacatgaaaaatgtgattccgttcccttaatttattttctcatatttttattgatatcgat |
25702456 |
T |
|
| Q |
201 |
gtgttaacgtgtgtccatgattgtgtttgtatatatgtaggtgtttcacgtatcataag-nnnnnnnngcttcattggcctattgacacatactcaaata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25702455 |
ttgttaacgtgtgtccatgattgtgtttgtatatatgtaggtgtttcacgtatcataagtttttttttgcttcattggcctattgacacatactcaaata |
25702356 |
T |
|
| Q |
300 |
aacacacacgaggaagtgtggagacttgggattccacataaaacgtcttccaact |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702355 |
aacacacacgaggaagtgtggagacttgggattccacataaaacgtcttccaact |
25702301 |
T |
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