View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_30 (Length: 331)
Name: NF20300_low_30
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8155171 - 8154927
Alignment:
| Q |
1 |
cagagaaatagttttggatgagatgaaagaattagagatctctaccnnnnnnntagtactatgttatagacaatgtagtaatgaggcacgcagagagaca |
100 |
Q |
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| T |
8155171 |
cagacaaatagttttagatgagatgaaagaattagagatctctaccaaaaaaatggtacaatgttatagacaatgtagtaatgaggcacgcagagagaca |
8155072 |
T |
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| Q |
101 |
cgtcttatacttgaggacattcgaatgcaaagactcaaaaataaagtataatccatttccatgtaatccaaactagttatatagtcagattttattttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| | |
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| T |
8155071 |
cgtcttatacttgaggacattcgaatgcaaagactcaaaaataaagtataatccatttccatgtaatcaaaactagttaaatagttagattttatttttc |
8154972 |
T |
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| Q |
201 |
ggccataattttcgacataaggatgtgacatgtttatgtatgatc |
245 |
Q |
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| T |
8154971 |
ggccataattttcgacataatgatgtgacatgtttatgtatgatc |
8154927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 8154880 - 8154841
Alignment:
| Q |
292 |
actataaatagatgaacattatcttatttgtatctagaga |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8154880 |
actataaatagatgaacattatcttatttgtatctagaga |
8154841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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