View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_low_34 (Length: 307)

Name: NF20300_low_34
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_low_34
NF20300_low_34
[»] chr7 (1 HSPs)
chr7 (18-307)||(3238415-3238704)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 3238704 - 3238415
Alignment:
Q  18 ccatgttagcaaccatatgccatgctgtgctttgtaggatctcatcataatttgtttttctaatctgaatctcaatttggatattatgatattccagtaa 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3238704 ccatgttagcaactatatgccatgctgtgctttgtaggatctcatcataatttgtttttctaatctgaatctcaatttggatattatgatattccagtaa 3238605  T
Q  118 ttagattgaaaatagctattattatattatttctaaattnnnnnnnggtttttatagacaaaatattgaattagagacaaaagttaagaggaaaatatgt 217  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3238604 ttagattgaaaatagctattattatattatttctaaattaaaaaaaggtttttatagacaaaatattgaattagagacaaaagttaagagaaaaatatgt 3238505  T
Q  218 taaatttgtctcttatattatttaccaaatttagtaattagtgaattagtaatcaatattatttgtcatgttaaaacaactcattttctt 307  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3238504 taaatttgtctcttatattatgtaccaaatttagtaattagtgaattagtaatcaatattatttgtcatgttaaaacaactcattttctt 3238415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University