View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_35 (Length: 307)
Name: NF20300_low_35
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_35 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 84966 - 84673
Alignment:
| Q |
14 |
acatatatgaacacaagccacaagtaatgacaaatagaaagtaaggcttagtgtggtattatgttcattttagttgatggtgcatgagaagtggaccttg |
113 |
Q |
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| T |
84966 |
acatatatgaacacaagccacaagtaatgacaaatagaaagtaaggcttagtgtggtattatgttcattttagttgatggtgcatgagaagtggaccttg |
84867 |
T |
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| Q |
114 |
gaaatacataataagtagtaatgcacaaccaatggcgttgctagcgccgacatatgggaatggaaatcaaacggcaatgcataatatttaccagatttca |
213 |
Q |
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| T |
84866 |
gaaatacataataagtagtaatgcacaaccaatggcgttgctagcgccgacatatgggaatggaaatcaaacggcaatgcataatatttaccagatttca |
84767 |
T |
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| Q |
214 |
cttgaaaaggcaaggtaagaatgattcaagaatacatatctaactatacaacttgtttggagagtagttaagaaactcatagctaaaaacattc |
307 |
Q |
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| T |
84766 |
cttgaaaaggctaggtaagaatgattcaagaatacatatctaactatacaacttgtttggagagttgttaagaaactcatagctaaaaacattc |
84673 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 54987515 - 54987471
Alignment:
| Q |
263 |
aacttgtttggagagtagttaagaaactcatagctaaaaacattc |
307 |
Q |
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| T |
54987515 |
aactttttcggagagtagttaagaaactcatagctaaaaacattc |
54987471 |
T |
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