View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_43 (Length: 266)
Name: NF20300_low_43
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 10254025 - 10254172
Alignment:
| Q |
17 |
atatgaccgcaggaatatttgtatgcattcaatccaacgcaattttctcaaagtgtcagcatcaaaacaataaggaatctatttttggattaatatggaa |
116 |
Q |
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| T |
10254025 |
atatgaccgcaggaatatttgtatgcattcaatccaacgcaattttctcaaagtgtcagcatcaaaacaataaggaatctatttttggattaatatggaa |
10254124 |
T |
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| Q |
117 |
ctcaaattcctttctattatctctctcactctcttgcttatatttatt |
164 |
Q |
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| T |
10254125 |
ctcaaattcctttctattatctctttcactctcttgcttatatttatt |
10254172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 10254216 - 10254291
Alignment:
| Q |
175 |
atgaaagttagatacttatatttcagattcaaaactctaatgtgttgtttgtgtcctaaaataattcataatatct |
250 |
Q |
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| T |
10254216 |
atgaaagttagatacttatatttcagattcaaaactctaatgtgttgtttgtgtcctaaaataattcataatatct |
10254291 |
T |
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