View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_45 (Length: 256)
Name: NF20300_low_45
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35153729 - 35153936
Alignment:
| Q |
1 |
ctcaaatcaaggttcatcgtactccaaaaagaactttgataggcacccattgctcagtaacttcagctgccataaatcataatcacgtatccagatgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35153729 |
ctcaaatcaaggttcatcgtactccaaaaagaactttgataggcacccattgctcagtaacttcagctgccataaatcataatcacgtgtccagatgcaa |
35153828 |
T |
|
| Q |
101 |
tcaattcaaaca----------atagagacaagatgattaacacaaataagcaacatcattggtagctcaaccacaccaagaacatcaaaaactcacaaa |
190 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35153829 |
tcaattcaaacaaactaaatacatagagacaagatgattaacacaaataagcaacatcattgatagctcaaccacaccaagaacatcaaaaactcacaaa |
35153928 |
T |
|
| Q |
191 |
tttgttgg |
198 |
Q |
| |
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|||||||| |
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| T |
35153929 |
tttgttgg |
35153936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 53981279 - 53981072
Alignment:
| Q |
1 |
ctcaaatcaaggttcatcgtactccaaaaagaactttgataggcacccattgctcagtaacttcagctgccataaatcataatcacgtatccagatgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
53981279 |
ctcaaatcaaggttcatcgtactccaaaaagaactttgataggcacccattgctcagtaacttcagctgccataaatcataaccacgtgtccagatgcaa |
53981180 |
T |
|
| Q |
101 |
tcaattcaaaca----------atagagacaagatgattaacacaaataagcaacatcattggtagctcaaccacaccaagaacatcaaaaactcacaaa |
190 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53981179 |
tcaattcaaacaaactaaatatatagagacaagatgattaacacaaataagcaacatcattgatagctcaaccacaccaagaacatcaaaaactcacaaa |
53981080 |
T |
|
| Q |
191 |
tttgttgg |
198 |
Q |
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||| |||| |
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| T |
53981079 |
tttattgg |
53981072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 2523280 - 2523214
Alignment:
| Q |
20 |
tactccaaaaagaactttgataggcacccattgctcagtaacttcagctgccataaatcataatcac |
86 |
Q |
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||||||||||| |||||| |||||||||||||||| || | |||||||| ||||||||| ||||||| |
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| T |
2523280 |
tactccaaaaaaaactttaataggcacccattgcttaggagcttcagctaccataaatcctaatcac |
2523214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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