View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_48 (Length: 242)
Name: NF20300_low_48
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8154782 - 8154567
Alignment:
| Q |
1 |
agaagtctaatcgctataaatttatttttaagatgaataagtgagaaattatgcaatatcctcctcaccatgatatatattataaattcgatatcttgat |
100 |
Q |
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| T |
8154782 |
agaagtctaatcagtataaattcatttttaagatgaataagcgagaaattatgcaatatcctc---accatgatatatattataaatttgatatcttgat |
8154686 |
T |
|
| Q |
101 |
cattgaacatattatgcaatattcataccaactaagctaagctcacaaataccgaattcttcatttctatcctcaccatgacaaacacaatcaacctctt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8154685 |
tattgaacatattatgcaatatttataccaactaaactaagctcataaataccgaattcttcatttctatcctcaccatgacaaacagaatcaacctctt |
8154586 |
T |
|
| Q |
201 |
tacatggaagaacaagaac |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
8154585 |
tacatggaagaacaagaac |
8154567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 41625231 - 41625194
Alignment:
| Q |
109 |
atattatgcaatattcataccaactaagctaagctcac |
146 |
Q |
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|
| T |
41625231 |
atattatgcattattcataccaactgagctaagctcac |
41625194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 21863917 - 21863951
Alignment:
| Q |
111 |
attatgcaatattcataccaactaagctaagctca |
145 |
Q |
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|
| T |
21863917 |
attatgcaatattcctaccaactaagctaagctca |
21863951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 21919778 - 21919812
Alignment:
| Q |
111 |
attatgcaatattcataccaactaagctaagctca |
145 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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|
| T |
21919778 |
attatgcaatattcctaccaactaagctaagctca |
21919812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 28815648 - 28815616
Alignment:
| Q |
115 |
tgcaatattcataccaactaagctaagctcaca |
147 |
Q |
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|||||||||| |||||||||||||||||||||| |
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|
| T |
28815648 |
tgcaatattcctaccaactaagctaagctcaca |
28815616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 46998406 - 46998438
Alignment:
| Q |
117 |
caatattcataccaactaagctaagctcacaaa |
149 |
Q |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
46998406 |
caatattcataccaactgagctaagctcacaaa |
46998438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 19253942 - 19253914
Alignment:
| Q |
113 |
tatgcaatattcataccaactaagctaag |
141 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
19253942 |
tatgcaatattcataccaactaagctaag |
19253914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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