View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_5 (Length: 599)
Name: NF20300_low_5
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 79 - 594
Target Start/End: Original strand, 3819885 - 3820383
Alignment:
| Q |
79 |
taggtggtagtgcattattttctttggtaactacactcatctatcaatattcaacggtgaacctttgtccaatatatagacagtcttttcagtatcaaac |
178 |
Q |
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| T |
3819885 |
taggtggtaatccattattttctttggcaactacactcatctatcaatactcaacggtgaacctttgtcgaatatata-------------------aac |
3819965 |
T |
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| Q |
179 |
ttccaacaaaagcatcaattgttatgatattaacctataaagatagtctaacccaaatgactaagtgt-gaatgtttcatcatttaaatatcacaatgag |
277 |
Q |
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| T |
3819966 |
ttccaacaaaagcatcaattgttatgatattaacctataaagatagtctaacccaaatgactaagtgttgaatgtttcatcatttaaatatcacaatgag |
3820065 |
T |
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| Q |
278 |
ctttctttagctaagactcatagcagcctcaatttgtctaaaactttgtatattctagaaaactcatgcgtacttacaaatgctttaataccaagttcga |
377 |
Q |
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| T |
3820066 |
ctttctttagctaagactcatagcagcctcaatttgtctaaaactttgtatattctagaaaactcatgcgtacttacaaatgctttattaccaagtgcaa |
3820165 |
T |
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| Q |
378 |
tggtacaaaaatcaatc-nnnnnnnactgaatatattaatcttagatattcattaagatgctaaataatcaatttttgtcggcagagttacatgaagttc |
476 |
Q |
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| T |
3820166 |
tggtacaaaaatcaatcttttttttactgaatatattaatcttagatattcattaagatgctaaataatcaatttttgtcggcagagttacatgaagttc |
3820265 |
T |
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| Q |
477 |
gcaaatttttagcataatgtagggtcagatgagacaattctttggtactttttcacatggggagagcaaggacacaagccctaccattcagacatttctt |
576 |
Q |
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| T |
3820266 |
gcaaatttttagcataatgtagggtcagatgagacaattctttggtactttttcacatggggagagcaaggacacaagccctaccattcagacatttctt |
3820365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 3819541 - 3819604
Alignment:
| Q |
18 |
ataacattgccacctctttaata-ccaacgtctacaacaacttccactctatcaatactaacta |
80 |
Q |
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| T |
3819541 |
ataacattaccacctctttaatagccaacgtctacaacaacttccactctatcaatactaacta |
3819604 |
T |
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