View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_52 (Length: 225)
Name: NF20300_low_52
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 29009435 - 29009237
Alignment:
| Q |
19 |
attgaatcaccttgctgatcttaggtacaattgacctaagcatggaaagcctgtcattcaaacgctttcttcttctcctttcaacccttttggatttggc |
118 |
Q |
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| T |
29009435 |
attgaatcaccttgctgatcttaggtacaattgacctaagcatggaaagcctgtcattcaaacgctttcttcttctcctttcaacccttttggatttggc |
29009336 |
T |
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| Q |
119 |
ctttttctcagcacaaaaacccatgttaaaaactggagtctcgctaacttgttcctcaactttgcagctgattttactttgttccaaactcttcttctc |
217 |
Q |
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| T |
29009335 |
ttttttctcatcacacaaacccatgttaaaaactggagtctcactaacttgttcctcaactttgcagctgattttactttgttccaaactcttgttctc |
29009237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 13149538 - 13149657
Alignment:
| Q |
98 |
ttcaacccttttggatttggcctttttctcagcacaaaaacccatgttaaaaactggagtctcgctaacttgttcctcaactttgcagctgattttactt |
197 |
Q |
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| T |
13149538 |
ttcaacccttttggatttggcttttttctcaccacacaaacccatgttaaaaactggtgtctcactaacttgttcctcaactttgcagctgattttactc |
13149637 |
T |
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| Q |
198 |
tgttccaaactcttcttctc |
217 |
Q |
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| T |
13149638 |
tcttcaaacctcttgttctc |
13149657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 13149429 - 13149511
Alignment:
| Q |
19 |
attgaatcaccttgctgatcttaggtacaattgacctaagcatggaaagcctgtcattcaaacgctttcttcttctcctttca |
101 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
13149429 |
attgaatcaccttgctgatcttagggacaattgacctaagcatggaaagcctgtcattcaaacgctttcttctccttctttca |
13149511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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