View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_low_53 (Length: 223)

Name: NF20300_low_53
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_low_53
NF20300_low_53
[»] chr6 (14 HSPs)
chr6 (19-174)||(26651174-26651337)
chr6 (19-174)||(26757142-26757305)
chr6 (19-174)||(26966168-26966332)
chr6 (19-89)||(27422504-27422574)
chr6 (19-174)||(26631524-26631688)
chr6 (19-174)||(26737499-26737663)
chr6 (22-89)||(27714117-27714184)
chr6 (22-89)||(27702350-27702417)
chr6 (26-86)||(27652256-27652316)
chr6 (44-120)||(31289405-31289487)
chr6 (19-88)||(26890129-26890198)
chr6 (19-90)||(26828430-26828501)
chr6 (24-89)||(26628081-26628146)
chr6 (24-89)||(26734058-26734123)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-89)||(64789-64859)
[»] scaffold0349 (1 HSPs)
scaffold0349 (22-89)||(17760-17827)
[»] chr8 (1 HSPs)
chr8 (22-129)||(29269963-29270077)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26651174 - 26651337
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt------tcgaaagggcagtgaataatgct 112  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||      ||||||||||||||| |||||||    
T  26651174 atctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgct 26651273  T
Q  113 atgttttgagctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    ||| |||||||| |||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  26651274 atgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26757142 - 26757305
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt------tcgaaagggcagtgaataatgct 112  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||      ||||||||||||||| |||||||    
T  26757142 atctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgct 26757241  T
Q  113 atgttttgagctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    ||| |||||||| |||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  26757242 atgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26757305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26966168 - 26966332
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt------ttcgaaagggcagtgaataatgct 112  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||      ||||||||||||| ||||||||||    
T  26966168 atctgtagtcatctggctatttgcactgtcatgcgacatgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcagcgaataatgct 26966267  T
Q  113 a-tgttttgagctcag--ttactggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    |   |||| | |||||  ||||||||| |||| |||  ||||||||||||| |||||| ||||||    
T  26966268 acacttttcatctcagttttactggttgcagagtttgaagaatttcaatcttagtacaaaaattg 26966332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 27422574 - 27422504
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  27422574 atctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgtt 27422504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26631524 - 26631688
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt-------cgaaagggcagtgaataatgc 111  Q
    ||||||||||||||||| |  ||||||||| | | |||||||||||| ||||||||| | ||||||||||||       | |||||||||||| ||||||    
T  26631524 atctgtagtcatctggccacttgcattgtcct-caacatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgc 26631622  T
Q  112 tatgttttg-agctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    |||| || | ||||||||||  |||||| |||| |||||||||||||||| | |||||||||||||    
T  26631623 tatgcttcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattg 26631688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26737499 - 26737663
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt-------cgaaagggcagtgaataatgc 111  Q
    ||||||||||||||||| |  ||||||||| | | |||||||||||| ||||||||| | ||||||||||||       | |||||||||||| ||||||    
T  26737499 atctgtagtcatctggccacttgcattgtcct-caacatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgc 26737597  T
Q  112 tatgttttg-agctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattg 174  Q
    |||| || | ||||||||||  |||||| |||| |||||||||||||||| | |||||||||||||    
T  26737598 tatgcttcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattg 26737663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 27714184 - 27714117
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||  || |||||||||||||    
T  27714184 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcgcagaatccgtt 27714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 27702417 - 27702350
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||  || | |||||||||||    
T  27702417 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgtt 27702350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 27652316 - 27652256
Alignment:
Q  26 gtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatcc 86  Q
    ||||||||||||| |||||||||||| || ||||||||| |||||||||||| || |||||    
T  27652316 gtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatcc 27652256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 31289405 - 31289487
Alignment:
Q  44 ttgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt------ttcgaaagggcagtgaataatgctatgttttg 120  Q
    |||||||||||||||||||| | ||||||||| | ||||||||||      |||||||||||||||| |||||||||| ||||    
T  31289405 ttgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttg 31289487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 26890129 - 26890198
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt 88  Q
    |||||||||||||||||||| |  | ||||||| || |||||||||| ||| ||||||| ||||||||||    
T  26890129 atctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgt 26890198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 26828430 - 26828501
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt 90  Q
    ||||||||| ||||||||||  |||||||||||||  |||||||| | ||||||| ||| || |||||||||    
T  26828430 atctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgttt 26828501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 26628081 - 26628146
Alignment:
Q  24 tagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||| | ||||||||||||| | |||||||||| ||||| ||||  || ||||||||    
T  26628081 tagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26628146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 26734058 - 26734123
Alignment:
Q  24 tagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||| | ||||||||||||| | |||||||||| ||||| ||||  || ||||||||    
T  26734058 tagtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26734123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 64789 - 64859
Alignment:
Q  19 atctgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  64789 atctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgtt 64859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 17760 - 17827
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 89  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||  || |||||||||||||    
T  17760 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcgcagaatccgtt 17827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 29270077 - 29269963
Alignment:
Q  22 tgtagtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt------ttcgaaagggcagtgaataatgctatg 115  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||| || | || |||||||      |||||||||||||||| ||||| ||||    
T  29270077 tgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatg 29269978  T
Q  116 ttttg-agctcagtt 129  Q
     |||| |||||||||    
T  29269977 ctttgcagctcagtt 29269963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University